Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1333 ATGGTGGTGGTAGAGATTGGTCTCGGCGGTGGCAAACTGAAGGAGAGCAGAGCCACTCCCATGGAAGCCCAAGCCTCAACCTTAGCCTCTACACCAGCACCAACTCCAGCACCACTAGTTGTAAATGTAGAATACTACAAAGAAATCGAAAGGGCTCATAGATATCTCTGTGCTTTCATTTCCAACAAAAAATGTGCACCCATGATGCTCCTGTTTCATGATGCAGGCACTTATGATGCTCTCACAAAGACAGGGGGCCCAAATGGCTCCATTAGAAACCCACAAGAGCTTAATCATTCTGCAAATAGGGGTTTGAAAACGGCAGTTGATCTTTGTGGTGCTGAACATTTAAGGTCAGTCTTTAACCGGATGGGTCTTGAGGACAAGGATATTGTGGCCCTCTCCGGAGCTCATACATTGGGAGGGGCACGTAAGCAAGTTCCAGGCTTTGATGGCAAGTGGACAGAGGAGCCCTGGAAGTTCGACAATTCGTATTTCAAGCGAGGATTCAACAGGGAGGCAGGCGATTGTTTATATTTTCCACAGACCAAGCATTAA 558 0.4731 MVVVEIGLGGGKLKESRATPMEAQASTLASTPAPTPAPLVVNVEYYKEIERAHRYLCAFISNKKCAPMMLLFHDAGTYDALTKTGGPNGSIRNPQELNHSANRGLKTAVDLCGAEHLRSVFNRMGLEDKDIVALSGAHTLGGARKQVPGFDGKWTEEPWKFDNSYFKRGFNREAGDCLYFPQTKH* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1333 185 ProSitePatterns Peroxidases proximal heme-ligand signature. 130 140 IPR019793 -
Vvi4g1333 185 Gene3D Peroxidase, domain 2 114 177 - -
Vvi4g1333 185 Pfam Peroxidase 114 169 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi4g1333 185 PRINTS Plant ascorbate peroxidase signature 82 92 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1333 185 PRINTS Plant ascorbate peroxidase signature 64 79 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1333 185 PRINTS Plant ascorbate peroxidase signature 96 120 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vvi4g1333 185 SUPERFAMILY Heme-dependent peroxidases 49 171 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi4g1333 185 Gene3D - 54 112 - -
Vvi4g1333 185 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 114 167 IPR044831 GO:0004601|GO:0034599
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1333 Vvi-Chr4 20263388 20278688 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1333 K00434 - vvi:104879121 154.836