Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1332 ATGTGGAATGTTCCCCCTGGTTTCAGGCCCAGCACATCTGCGCCTTCGTCTCCCGCAAAGCCAATTGGGGTGTCAAGAACTCGCTCAGACTCCTTTCATGTCACCCACAAAGTCCCTGTTGGCGACACTCCTTATGTGAGAGCCAAAAAGGTTCAGTTGGTTGACAAGGACCCGGAAAAGGCAATTCCGCTATTTTGGTCCGCCATTAATGCTGGAGATCGAGTGGATAGTGCGCTCAAGGACATGGCCATTGTGATGAAGCAACAGAACAGGGCTGAAGAAGCCATTGAGGCTATTAAATCGCTGCGAAGTCGTTGTTCAGATCAAGCCCAAGAGTCTCTTGATAATATCCTTCTGGATCTGTACAAGAGATGCGGGAGATTGGATGATCAAATTGCACTTTTGAGGCACAAATTGTTCTTGATTCAACAAGGGATGGCTTTCAATGGGAAGCGCACCAAGACTGCCAGATCCCAAGGGAAAAAATTTCAGGTGTCCGTGGGACAAGAAGCGACTCGGTTACTGGGGAACTTAGGATGGGCATTGATGCAGCAGAACAACTATATCGAAGCAGAAGATGCCTACAGGCGGGCACTTTCCATGGCTCCAGATAATAACAAGATGTGCAATCTGGGTATCTGCTTGATGAAGCAAGGGAGGATTCTGGAAGCCAAAGAAACCCTTAGAAGAGTGAAACCGGCTGTTGCAGATGGCCCGAGAGGTGTAGATTCCCACCTCAAAGCATTTGAGAGGGCACGGCAGATGCTGCTTGACCTTGAGTCTGAAATGTTGAATAAGGGAAGCGACCCTGTCGAGCAGAGTCGGCTCTTTGATGCCTTCCTCAGTTCTTCAGCGCTCTGGCAGCCTCAGCCTTGTAAGGACCAGCACACAACGAATACAATCAAATCTCAAGATGATTTTGGGGATGAGAACTTCGACACCAACAGAGTCATGAAGGTTCTTTCTGGACAGAAGATTGCCAAACCAACGGCTGTTCATGCGAACTCACTCAACGTCGCGGCATTGCCATTCTACTCATCAAAGACGACCAAGGACCCAATTGGAAAACCACTGCAGGAGTCCCTTAAGAGAACAAGATCAGGGCATGGTGCTAATTCGATAGGAGTGAATGAAACGGGGGCGTTCAGAAAGCCCTTAATGGAATCCATGGAACCAGAAAATAAGACTAGAAGGCGATCTCTTTCACCCGAAGAAAATGGGGACAAGTGGGCAGACTTTCTGCCAGACAGCAAGGAGTTTGAAGCGGCTCTTATTGCTGCAGTTCTGGGTTCAGCCACTGAAACAGGGAAGAAGACTGTGGAGACTGGAAACAGTTCTGGAATTTTACAGAATAAGATTGAGAGTAGGTTTAAAGTCTTTCAAGACATAACACTCTCTCTGAGCCCAAGAGCCTAA 1416 0.4809 MWNVPPGFRPSTSAPSSPAKPIGVSRTRSDSFHVTHKVPVGDTPYVRAKKVQLVDKDPEKAIPLFWSAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLFLIQQGMAFNGKRTKTARSQGKKFQVSVGQEATRLLGNLGWALMQQNNYIEAEDAYRRALSMAPDNNKMCNLGICLMKQGRILEAKETLRRVKPAVADGPRGVDSHLKAFERARQMLLDLESEMLNKGSDPVEQSRLFDAFLSSSALWQPQPCKDQHTTNTIKSQDDFGDENFDTNRVMKVLSGQKIAKPTAVHANSLNVAALPFYSSKTTKDPIGKPLQESLKRTRSGHGANSIGVNETGAFRKPLMESMEPENKTRRRSLSPEENGDKWADFLPDSKEFEAALIAAVLGSATETGKKTVETGNSSGILQNKIESRFKVFQDITLSLSPRA* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1332 471 PANTHER PROTEIN POLLENLESS 3-LIKE 2 14 465 IPR044961 -
Vvi4g1332 471 MobiDBLite consensus disorder prediction 388 412 - -
Vvi4g1332 471 ProSiteProfiles TPR repeat profile. 172 205 IPR019734 GO:0005515
Vvi4g1332 471 Gene3D Tetratricopeptide repeat domain 49 266 IPR011990 GO:0005515
Vvi4g1332 471 SMART tpr_5 172 205 IPR019734 GO:0005515
Vvi4g1332 471 MobiDBLite consensus disorder prediction 362 412 - -
Vvi4g1332 471 MobiDBLite consensus disorder prediction 9 24 - -
Vvi4g1332 471 Pfam Tetratricopeptide repeat 174 205 IPR001440 GO:0005515
Vvi4g1332 471 Coils Coil 85 112 - -
Vvi4g1332 471 MobiDBLite consensus disorder prediction 1 30 - -
Vvi4g1332 471 SUPERFAMILY TPR-like 56 230 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1332 Vvi-Chr4 20260811 20262513 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1332 - - vvi:100257355 924.08