Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1325 ATGGGTTCAGCTCCAGCTTCTGCTTTTCTCTGCATATTTGTTGTTCTCTGCTCATATGTGACAGTTAATGGCGGTTATATCAAGTACAATACTGGAGCTGGGATTGTTGAAGGCAAATTGAATGTCCATTTGGTTCCACATTCACATGACGATGTGGGGTGGCTGAAGACAATTGATCAGTACTATGTGGGATCAAATAACAGTATTCAGGGCGCTTGTGTTGAGAATGTGTTGGACTCGGTTGTGGAGTCATTGCTTCGGAACCAAAATAGAAAATTTGTGTTTGCAGAGATGGCTTTTTTCAGTAGATGGTGGTATGAACAAAGTGAGGAAATACAAGAAACAGTAGGAAAACTTGTAGATGGTGGCCGGTTGGAATTCATAAATGGTGGTTGGTGTATGCATGATGAGGCTACAGTCCATTACATTGACATGATTGACCAGACAACCCTAGGTCATCGCTTGATAAAGAAGGCGTTCAACAAGGCTCCTCGAGCTGGATGGCAGATTGATCCATTTGGACACTCTGCAGTTCAAGCTTACCTTCTCGGGGCTGAGCTCGGCTTTGATTCTGTGCATTTTGCTAGAATTGATTACCAAGACAGAGCAAAGCGCAAGGAGGATAAATCTCTTGAAGTAATATGGCGTGGGTCAAAAACCTTTGGTTCCACATCTCAGATCTTCACAAATGCGTTTCCTGTTCATTATAGTCCTCCAAATGGTTTCGGTTTTGAAATCGATGATTTCTCCATACCTGTCCAGGATAATCCACATCTATTTGACTACAATGTTGAACAGCGAATTAATGATTTTGTTGCTGCAGCTTTAGTCCAAGCAAATGTGACACGGACAGACCATATTATGTGGACAATGGGGGATGATTTCCAGTACCAATATGCTGAGACCTGGTTCAAGCAGATGGACAAACTAATTCATTATGTTAACAAGGATGGTCGGGTGAATGCATTGTATTCTACTCCATCCATGTATGTTGATGCAAAACATGCAACAAATGAAGAATGGCCACTCAAAACTCATGACTATTTCCCATATGCAGACAGGATAAATGCTTATTGGACTGGATATTTTACTAGCCGCCCAGCTTTGAAGCGATATGTTCGAATGCTAAGTGGATATTATTTGGCAGCACGCCAGCTTGAATTCCTGGCTGGAAGGAGCTCGACTGGTCTCAACACTTTTAGTTTGGGGGATGCTTTAGGAATTGCACAGCACCATGATGCTGTAACTGGTACTGCTAAACAACACACAACAAATGACTATGCAAAGCGCCTGGCAATTGGGGCTTCTGAGACAGAAGCCACTGTGAATTCAGCTCTTTCATGCATAGCTAGTAAAAACTCAGGTCAATGTGCAGCATCCACATCGTCATTTAGCCAGTGCCAATTACTCAACATAAGTTTCTGTCCACCAACTGAGGAAGATATTCCTGAAGGGAAGAGTTTGGTTGTAGTGGCATATAATCCACTTGGATGGAAGCGTACTGAATTTGTGAGGATACCGGTCAATGATTCTGACTTTGTTGTCCAAGATTCTACTGGCAACACCATTGAGGCACAATATCTTAAGGTGGACAATGTTACAATCAACTTAAGGAACTTTTATACCAAGGCCTACTTAGGCAGGTCACCAAAAAATGTCCCTAAGTTTTGGCTTTTGTTTCAAGTATCTGTGCCACCTCTGGGATGGAACACATACTTCATTTCTAAAGCATCTGGAAAAGAAAGTAGCAGAAGTGGATATATCTCTGTGATGGACAGTCCTCAGAATGAGTCCATTGAAGTTGGACCTGGAAGTTTGAAGATGTCTTTTTCTTCTACCACTGGACAGCTTGAACGGATGTTTGATTCTAAGACAGGGGTTGATTTACCAATACAGCAAAGCTATCTCTGGTATGGTTCAAGTGATGGTGGATTGGATTCCCAGCCTTCTGGTGCATACATTTTCAGGCCTAATGGTGCTCCTCCAACAGTTGTTTCAAGATCAGTGCCCTTGAAGGTCATGCGTGGGCCACTAGTTGATGAAGTCCATCAAGAGTTCAGTCCATGGATCTACCAGGTGACCAGACTTTACAAAGACAAAGATCATGCTGAAGTTGAATTCACTATTGGTCCGATCCCTGTGGATGATAGTGTTGGAAAAGAGGTCATTACACGAATGACAGCAAATATGGTCACAAACAAGGTGTTTTATACAGATTCTAGCGGAAGGGATTTTCTAAAGCGGGTTCGGGATTATAGAGAAGACTGGTCTCTTTCAGTGAATCAGCCAGAAGCAGGGAACTACTATCCAATTAATCTTGGAATCTTTACCACGGATAAGAAATCAGAATTTTCTGTCTTGGTTGATCGTGCCACTGGAGGATCTAGCATCAAAGATGGACAAGTAGAGCTAATGCTTCATAGGCGTATGATCTTTGATGACAGTAGAGGAGTGGGTGAAGCTCTTGATGAGACCACATGTGTTGAAAATACATGTGAAGGACTTACAGTTCGGGGAAATTATTATATGAGCATCGACCTGCTAGGGGATGGTGCACAGTGGCGTAGAACAACTGGCCAGGAAATTTACTCACCGCTTCTCTTAGCTTTTACACATGAGAAGTTGGAGACCTGGACAGCTTCTCACTTGACAAAGGGAACAGTAATGGAACCCAATTACAGTTTACCTCTTAATGTTGCTGTGATTACTCTTCAGGAGTTGGATGATGGCAGCGTTCTCCTCCGTCTGGCACATTTATATGAGGCTGGAGAAGATGCTAAATATTCAACATTGGCAAAGGTTGAACTCCAGAAGATGTTTAGAGGAAAAAAGATAAAGGAGATAAGGGAAACGAACTTGTCAACTAACCAAGAGAAGTCTGAGATGAAGACTCTGAAGTGGAAAGTTGAAGGTGACAATGGAGATGAAATTGCCCCTCTTAGAGGTGGCCCTGTTGATAATTCAACTCTTGTTGTAGAGCTTGGTCCAATGGAGATCCGCACCTTCTTGTTAGAATTTTAA 3021 0.425 MGSAPASAFLCIFVVLCSYVTVNGGYIKYNTGAGIVEGKLNVHLVPHSHDDVGWLKTIDQYYVGSNNSIQGACVENVLDSVVESLLRNQNRKFVFAEMAFFSRWWYEQSEEIQETVGKLVDGGRLEFINGGWCMHDEATVHYIDMIDQTTLGHRLIKKAFNKAPRAGWQIDPFGHSAVQAYLLGAELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSTSQIFTNAFPVHYSPPNGFGFEIDDFSIPVQDNPHLFDYNVEQRINDFVAAALVQANVTRTDHIMWTMGDDFQYQYAETWFKQMDKLIHYVNKDGRVNALYSTPSMYVDAKHATNEEWPLKTHDYFPYADRINAYWTGYFTSRPALKRYVRMLSGYYLAARQLEFLAGRSSTGLNTFSLGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASETEATVNSALSCIASKNSGQCAASTSSFSQCQLLNISFCPPTEEDIPEGKSLVVVAYNPLGWKRTEFVRIPVNDSDFVVQDSTGNTIEAQYLKVDNVTINLRNFYTKAYLGRSPKNVPKFWLLFQVSVPPLGWNTYFISKASGKESSRSGYISVMDSPQNESIEVGPGSLKMSFSSTTGQLERMFDSKTGVDLPIQQSYLWYGSSDGGLDSQPSGAYIFRPNGAPPTVVSRSVPLKVMRGPLVDEVHQEFSPWIYQVTRLYKDKDHAEVEFTIGPIPVDDSVGKEVITRMTANMVTNKVFYTDSSGRDFLKRVRDYREDWSLSVNQPEAGNYYPINLGIFTTDKKSEFSVLVDRATGGSSIKDGQVELMLHRRMIFDDSRGVGEALDETTCVENTCEGLTVRGNYYMSIDLLGDGAQWRRTTGQEIYSPLLLAFTHEKLETWTASHLTKGTVMEPNYSLPLNVAVITLQELDDGSVLLRLAHLYEAGEDAKYSTLAKVELQKMFRGKKIKEIRETNLSTNQEKSEMKTLKWKVEGDNGDEIAPLRGGPVDNSTLVVELGPMEIRTFLLEF* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1325 1006 Gene3D Glycoside hydrolase 38, N terminal domain 40 320 IPR027291 -
Vvi4g1325 1006 Pfam Glycosyl hydrolases family 38 N-terminal domain 41 352 IPR000602 GO:0004559|GO:0006013
Vvi4g1325 1006 FunFam Alpha-mannosidase 319 399 - -
Vvi4g1325 1006 SUPERFAMILY Galactose mutarotase-like 459 1006 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vvi4g1325 1006 Gene3D - 600 864 - -
Vvi4g1325 1006 Gene3D Glycoside hydrolase family 38, central domain 399 455 IPR037094 GO:0004559|GO:0006013
Vvi4g1325 1006 Gene3D Glycoside hydrolase family 38, central domain 321 398 IPR037094 GO:0004559|GO:0006013
Vvi4g1325 1006 FunFam Alpha-mannosidase 40 320 - -
Vvi4g1325 1006 SUPERFAMILY Families 57/38 glycoside transferase middle domain 357 455 IPR028995 -
Vvi4g1325 1006 FunFam Alpha-mannosidase 884 1006 - -
Vvi4g1325 1006 FunFam Alpha-mannosidase 600 864 - -
Vvi4g1325 1006 Gene3D - 477 599 IPR013780 -
Vvi4g1325 1006 PANTHER ALPHA-MANNOSIDASE 10 1006 - -
Vvi4g1325 1006 SMART Alpha_mann_mid_2 357 431 IPR015341 GO:0004559|GO:0006013
Vvi4g1325 1006 FunFam Alpha-mannosidase 466 577 - -
Vvi4g1325 1006 FunFam Alpha-mannosidase 400 455 - -
Vvi4g1325 1006 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 898 1003 IPR041147 -
Vvi4g1325 1006 CDD GH38N_AMII_LAM_like 40 316 - -
Vvi4g1325 1006 Pfam Alpha mannosidase middle domain 357 448 IPR015341 GO:0004559|GO:0006013
Vvi4g1325 1006 Pfam Glycosyl hydrolases family 38 C-terminal domain 604 816 IPR011682 GO:0004559|GO:0006013
Vvi4g1325 1006 Gene3D - 887 1006 - -
Vvi4g1325 1006 SUPERFAMILY Glycoside hydrolase/deacetylase 29 353 IPR011330 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1325 Vvi-Chr4 20192567 20209581 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1325 6 953 Glycoside Hydrolase AT3G26720 60.609 0.0 1218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1325 K01191 - vvi:100259071 2050.02