Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1322 ATGGTGCTCGAGGCGACTATGATCTGTATCGACAATTCCGAATGGATGCGAAATGGCGATTATTCTCCCACTAGATTTCAGGCTCAAGCCGACGCCGTTAATCTTATCTGTGGAGCTAAGACTCAGTCCAATCCAGAAAATACTGTGGGAGTTCTTACAATGGCAGGCAAAGGGGTCCGAGTTTTGGTCACTCCCACAAGCGATCTCGGCAAGATCTTGGCGTGCATGCACGGTTTAGAGGTGGGTGGTGAGATGAACTTAGCCGCAGGTATCCAAGTGGCTCAATTGGCTCTTAAGCATCGACAAAACAAAAAGCAGCAACAAAGGATCATTGTCTTTGCTGGAAGTCCTGTAAAGTATGACAAGAAGGTATTAGAGATGATTGGAAGAAAGCTAAAAAAGAATAGTGTGGCCATTGATATTGTGGATTTTGGTGAGGATGATGATGGGAAGCCAGAGAAACTTGAGGCCCTTCTTGGTTCTGTAAACAACAATGATAGTAGCCACATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGTACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCCGCCGCAGCAGCAGCTGGTGGTGTGGCTGGTTTTGATTTTGGTGTGGATCCAAACTTAGATCCTGAACTGGCTCTTGCTCTTAGAGTTTCAATGGAAGAAGAGAGAGCGAGACAAGAAGCTGCTGCTAAAAAGGCTGCGGAGGAGGCTTCCAGACAGGAAAAGGAAGGGGAACAGCAATCTAGTTCTCAAGATGCAACTATGACTGAGCACGCCAATGTTGCAGCTTCTGATGCTGATAAGAAAAGTGATCTAATGCAGGCCCTTGCAATGTCTATGGATGACCCTGCCACTAGCCTTGCCATGAGAGACACAGATATGTCTGAGGCAGCTGCAGATGATCAGGACTTGGCTCTTGCTCTTCAATTATCTGTGCAGGACACTGGAAAAGATTCAACCAGTCAGACCGACATGAGTAAATTGTTGACAGATCAGACTTTTGTGTCCTCTATCCTTGCATCTCTTCCAGGAGTTGACCCCAATGATCCTTCAGTCAAAGATTTGCTAGCATCCATGCAAAATGAGTCAGAGTCCCAGCAGAAGAAGAATGAGGACAAGGCACCAGATGAGGAAGACAAGTGA 1191 0.4668 MVLEATMICIDNSEWMRNGDYSPTRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEVGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKYDKKVLEMIGRKLKKNSVAIDIVDFGEDDDGKPEKLEALLGSVNNNDSSHIVHVPAGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVAGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEEASRQEKEGEQQSSSQDATMTEHANVAASDADKKSDLMQALAMSMDDPATSLAMRDTDMSEAAADDQDLALALQLSVQDTGKDSTSQTDMSKLLTDQTFVSSILASLPGVDPNDPSVKDLLASMQNESESQQKKNEDKAPDEEDK* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1322 396 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Vvi4g1322 396 Pfam Ubiquitin interaction motif 287 298 IPR003903 -
Vvi4g1322 396 Pfam Ubiquitin interaction motif 316 330 IPR003903 -
Vvi4g1322 396 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Vvi4g1322 396 MobiDBLite consensus disorder prediction 242 283 - -
Vvi4g1322 396 MobiDBLite consensus disorder prediction 381 396 - -
Vvi4g1322 396 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Vvi4g1322 396 FunFam 26S proteasome non-ATPase regulatory subunit 4 3 186 - -
Vvi4g1322 396 CDD PSMD4_RAZUL 337 380 - -
Vvi4g1322 396 SMART VWA_4 2 175 IPR002035 -
Vvi4g1322 396 FunFam 26S proteasome regulatory subunit N10 220 297 - -
Vvi4g1322 396 SUPERFAMILY vWA-like 4 174 IPR036465 -
Vvi4g1322 396 Gene3D - 220 329 - -
Vvi4g1322 396 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Vvi4g1322 396 MobiDBLite consensus disorder prediction 356 396 - -
Vvi4g1322 396 MobiDBLite consensus disorder prediction 242 262 - -
Vvi4g1322 396 CDD VWA_26S_proteasome_subunit 1 188 - -
Vvi4g1322 396 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Vvi4g1322 396 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 315 334 IPR003903 -
Vvi4g1322 396 Coils Coil 232 259 - -
Vvi4g1322 396 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 386 IPR027040 GO:0006511|GO:0008540
Vvi4g1322 396 SMART uim 315 334 IPR003903 -
Vvi4g1322 396 SMART uim 283 302 IPR003903 -
Vvi4g1322 396 SMART uim 222 241 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1322 Vvi-Chr4 20147786 20163059 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1322 K03029 - vvi:100257366 699.508