Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1317 ATGGAAGAAGCCTCAGCAATTGGGTTGCCAGAGGCGTTTCTGGATTTTCTGAAGGAGAATGGTGTGGATCCTTCGATATATACAACAGCCGATTCAACGCCTCGATATATAAGGTTGAAACCCGGTAGCATTAGTGAAGCACAAATCCAACAGCTAGAAGCTGAATTCAAGTCGAAGCTTGAGAAAGTGGGTTGGTTACCGAATTTCTACTCTCTTCCACCCCAGATTCACATTGCAAACTCCATGGCTTACAAGGAAGGGAAGATATATGGAATTGATGCAGCTTCTGGGGCGGCTGTTTCAGCTTTAAATGTCTCTGAGGGAGATCATGTTCTTGATCTGTGTGCTGCTCCTGGTGCTAAACTTTGTATGACGTTAGACCTTATTGGTAATTCGGGTTCTGTAACTGGTGTCGATGTTGCAAGACATCGTTTAGCTGCTTGTAGAACAATGATTCAGAAATATGCACTGGGAGATAGGTGTCGCCTCTTTGTTGCTGATGGAACAACATTTTCCCTCATTCCTGTGATGGAACATTCAGATTCAAAATCAGGTGGTGAATTTGCATCTAAAGGAAAGGTGGATGTATTTAAGGAGTGGACTTCTAAAAGACCATGGAAAGAAAGGAAAAATGCAAAGAAAGCTAGGGAAGGCATTGGTTCACAGTTAGTCCCAGGGATTCAAGATCCAGAACTCATATTTTATGGGTGGCATTCTGGAGTGATTGGTCTTAGTAGAACTGAACTATATAAAATTGCATGTGACAGTGAGGTGTTGAAGTGTGGCTATGACAAGGTCCTTGTTGATGCAGAATGCACTCATGATGGGTCAATTAGACATATCCAAAAATTTGACCATTGGGGATGGGAAACACTTGAGCGCCGTGTATTAGATGCAGAGAGGACTGATAGCTTAACCGTTCTTCAGTTCCGGCTTCTAAGTAATGGTTTTAGATTACTAAAAGTTGGGGGATCACTTGTCTACAGCACGTGCAGTTTGACAGCTGCTCAGAATGAAGATGTGGTAGAACAATTTCTTCGGGAAAATGCTTCTGCTGTTCCCCGGAATCAAAGCCACCGATCTCATGCCTCGGACGAACTCTCCGGCGCCGAGAACTCTCCCATCGAGCAAGTAGCTCTAACCGTTCCGATCACCGACGACCGAACCCTCCCAGTAGTCACCTTCCGCATGTGGACTCTAGGAACCCTAGCCTGCGCACTCCTCTCCTTCCTCAACCAGTTCTTCTGGTACCGCAGGGAACCTCTGTCCATCACATCCATCTCCGCACAGATTGCCGTGGTCCCACTCGGCCACCTCATGGCGACGGTGATCACCAATCGAGTGTTCTTCAAGGGCAAAAGGTGGGAGTTCACTCTGAATCCAGGGCCCTTCAACATCAAAGAGCACGTTCTGATCACCATCTTTGCCAACTCCGGTGCCGGCAACGTTTACGCGATTCACATCGTTAGCGCCGTTAAAATATTCTACAAGCAGAATCTAACCTTCTTTGTGTCGTTACTGGTGGTTATAACGACGCAGGTGTTAGGATTTGGATGGGCCGGGATTTTCCGGCGTTATTTGGTGGAGCCGGCAGCCATGTGGTGGCCGCAGAATCTGGTACAAGTTTCGCTGTTCAGGGCATTGCATGAAAGAGAGAAGAGAATTAAAGGTGGATTAACGCGGAACCAGTTCTTCCTCATTGCCTTCATTTGCAGCTTTGCTTACTATATCTTTCCAGGCTACCTCTTCCCCATGTTGACCTCCCTCTCCTGGATATGCTGGATTTTCCCTACTTCCGTCTTAGCTCAACAGCTAGGTTCTGGACTTCATGGTCTTGGCATTGGTGCTATTGGGTTTGATTGGTCCAGCATATCCTCTTACCTTGGTAGCCCACTTGCTAGCCCATGGTTTGCCACTGCCAATATTGCTCTTGGATTTGCTCTTATCATGTATGTCATCACCCCAGTTGCTTACTGGTTCAATATCTACAAAGCCAAGGCCTTCCCCATATTCTCTGATGACCTGTTCATAGCTACTGGTCAAAGATACAACATCTCAGCCATTATAGACTCAAAATTCCATGTTGACATTCAAGCATATGAGCGTCAGGGTCCTCTCTATCTCAGCACCTTTTTTGCTATGTCGTATGGTGTTGGTTTTGCTTGTCTCACTGCTACTGTCGTTCATGTCTTCCTCTTCCATGGAAAAGAAATATGGCAACTAAGCAAGTCTGCATTCCAAGAGAACAAGATGGATGTCCACACAAAGCTCATGAGAAAATACAAGCAAGTCCCTGAGTGGTGGTTCATGTGCATCCTTTTCGTAAACATTGGGGCAACCATATTTACTTGCGAGTATTACAATAATCAACTCCAATTGCCATGGTGGGGCATATTGCTAGCATGTGGCCTTGCTATATTTTTCACTCTTCCTGTTGGAATCATTACTGCAACAACAAATCAGACACCTGCTTTAAATGTGATCACAGAGTATATCATCGGGTACATTTATCCAGGATTTCCTGTCGCCAACATATGTTTTAAAGTTTATGGGTACATAAGCATGAAACAGGGGATCGCCTTCCTGCAAGATTTCAAGCTTGGACATTACATGAAGATTCCTCCTCGAACAATGTTCATGGCACAGATAGTCGGTACCATAATAGCAGCATTAGTTCATTTGGGAACAGCGTGGTGGCTTATGGAAACCGTCCCAGACATATGCGACAGGGCACTGCTGCCAGCAGGCAGCCCATGGACTTGCCCTGGAGACCATGTATTCTATGATGCCTCTGTGATCTGGGGTCTGATTGGGCCCCGTAGAATTTTCGGAGATCTAGGCCACTACTCTGCCATCAACTGGTTTTTCTTAGGTGGGGCTATTGCTCCTCTCCTAGTTTGGCTTGCATACAAGGCTTTCCCAAACCAGCACTGGATCAGACTTATTACCATGCCCGTGCTCTTAGGTGCAACAGTTAACATGCCTCCAGCCACTGCTGTCAACTATACGAGCTGGATTATCATTGGATTTTTCTCGGGCTTTATCGCTTACAGGTACTACAGAAATTGGTGGAGTCGCCACAACTATGTACTCTCTGGGGCGCTTGATGCCGGGTTAGCCTTCATGGGGGTGCTTCTGTACTTGTGCATAGGGATGGAGCATGATAGCCTGAGCTGGTGGGGAAGCGATCCGGATGGATGCCCCCTGGCTTCTTGCCCAACAGCTCAAGGTGTTTTTGTTAAAGGCTGCCCAGTTTTCTGA 3261 0.4643 MEEASAIGLPEAFLDFLKENGVDPSIYTTADSTPRYIRLKPGSISEAQIQQLEAEFKSKLEKVGWLPNFYSLPPQIHIANSMAYKEGKIYGIDAASGAAVSALNVSEGDHVLDLCAAPGAKLCMTLDLIGNSGSVTGVDVARHRLAACRTMIQKYALGDRCRLFVADGTTFSLIPVMEHSDSKSGGEFASKGKVDVFKEWTSKRPWKERKNAKKAREGIGSQLVPGIQDPELIFYGWHSGVIGLSRTELYKIACDSEVLKCGYDKVLVDAECTHDGSIRHIQKFDHWGWETLERRVLDAERTDSLTVLQFRLLSNGFRLLKVGGSLVYSTCSLTAAQNEDVVEQFLRENASAVPRNQSHRSHASDELSGAENSPIEQVALTVPITDDRTLPVVTFRMWTLGTLACALLSFLNQFFWYRREPLSITSISAQIAVVPLGHLMATVITNRVFFKGKRWEFTLNPGPFNIKEHVLITIFANSGAGNVYAIHIVSAVKIFYKQNLTFFVSLLVVITTQVLGFGWAGIFRRYLVEPAAMWWPQNLVQVSLFRALHEREKRIKGGLTRNQFFLIAFICSFAYYIFPGYLFPMLTSLSWICWIFPTSVLAQQLGSGLHGLGIGAIGFDWSSISSYLGSPLASPWFATANIALGFALIMYVITPVAYWFNIYKAKAFPIFSDDLFIATGQRYNISAIIDSKFHVDIQAYERQGPLYLSTFFAMSYGVGFACLTATVVHVFLFHGKEIWQLSKSAFQENKMDVHTKLMRKYKQVPEWWFMCILFVNIGATIFTCEYYNNQLQLPWWGILLACGLAIFFTLPVGIITATTNQTPALNVITEYIIGYIYPGFPVANICFKVYGYISMKQGIAFLQDFKLGHYMKIPPRTMFMAQIVGTIIAALVHLGTAWWLMETVPDICDRALLPAGSPWTCPGDHVFYDASVIWGLIGPRRIFGDLGHYSAINWFFLGGAIAPLLVWLAYKAFPNQHWIRLITMPVLLGATVNMPPATAVNYTSWIIIGFFSGFIAYRYYRNWWSRHNYVLSGALDAGLAFMGVLLYLCIGMEHDSLSWWGSDPDGCPLASCPTAQGVFVKGCPVF* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1317 1086 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 25 410 IPR001678 GO:0008168
Vvi4g1317 1086 Pfam 16S rRNA methyltransferase RsmB/F 258 352 IPR001678 GO:0008168
Vvi4g1317 1086 Pfam 16S rRNA methyltransferase RsmB/F 101 171 IPR001678 GO:0008168
Vvi4g1317 1086 NCBIfam small oligopeptide transporter, OPT family 371 1053 IPR004648 GO:0055085
Vvi4g1317 1086 PRINTS RNA (C5-cytosine) methyltransferase signature 323 339 IPR023267 GO:0001510
Vvi4g1317 1086 PRINTS RNA (C5-cytosine) methyltransferase signature 112 122 IPR023267 GO:0001510
Vvi4g1317 1086 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 137 154 IPR023269 -
Vvi4g1317 1086 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 9 27 IPR023269 -
Vvi4g1317 1086 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 284 303 IPR023269 -
Vvi4g1317 1086 Gene3D Vaccinia Virus protein VP39 5 390 IPR029063 -
Vvi4g1317 1086 PANTHER ISP4 LIKE PROTEIN 366 1085 IPR004648 GO:0055085
Vvi4g1317 1086 MobiDBLite consensus disorder prediction 352 371 - -
Vvi4g1317 1086 Pfam OPT oligopeptide transporter protein 393 1050 IPR004813 GO:0035673
Vvi4g1317 1086 NCBIfam OPT family oligopeptide transporter 378 1051 IPR004813 GO:0035673
Vvi4g1317 1086 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 351 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1317 Vvi-Chr4 20106728 20116188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1317 375 1086 Organic Solute Cotransporters AT4G27730 65.363 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1317 - - vvi:100262585 1519.21