Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1315 ATGGGTCAAGTTTCTGCCTTCTCCTCCTCCTCTCCTTCTCTCGTCATCGTCCTCAGTCTTCTTCTCATCTTATTCATTTCTGAAGGTGTTTCGGGTTCTACATTTACGTTTCTGAACAGGTGTGACTTCACGGTATGGCCGGGAATTCTAGACAGCGCTGGTAGCCCAAAGCTGGAAACTACAGGGTTTGTGTTACCCAAGGGTAGTTCACGTGGCTTCCAAGCTCCGACGGGCTGGTCAGGTCGCTTCTGGGGCAGAACCGGCTGTAATTTTGATGGGTCGGGCCACGGTACATGCGCCACCGGAGACTGTGGGTCCGGTCAGGTAGAGTGCAACGGCGCTGGAGCTTCCCCGCCGGCGACACTCGCTGAGTTCACTCTCGGCTCTGGTAGTCAAGACTATTACGACGTCAGTCTCGTAGATGGCTACAATCTGCCAATGATGGTCGAAGGCAGGAGCAAATCGGGTGCTTGCACGTCCACCGGGTGCGTCACCGACCTGAATCGCCGGTGCCCGAATGAATTGAAGGTTGAGGGTGGTGAGGCGTGTAAGAGCGCCTGCGAGGCGTTCGGCAGCCCGGAGTACTGCTGCAGCGGCGCGTACAACACACCGTCGACGTGTAAGCCGTCGGTGTACTCTGAGATATTCAAGTCTGCGTGCCCCAGATCATACAGTTACGCTTATGATGATGCCACCAGCACTTTCACCTGTAACGGAGCCGATTACACCATCACATTCTGTCCTTCCTCTCCCAGCCAAAAATCTTCCAAGGATTCTCCAAGAGAAACGGGAACAACACCAGATAGTGGGTCAGGGTCAGGGTCAGGGTCAGGGCCAGAATCAGAATCGGCTTTAGCGTCGGCAGAGGGCACGATGCTAGCCAATTCTTGGTTAGCAAACTTGGCAACCGGTGCCAGTGGTACAGCCAGGAGCCACCCATGTTTAACACTACACTCTGGATTTGTTGTTGCAATCTTCTCATTAGTCCTTCCTTTTTTGGTAGGGTAG 1008 0.5407 MGQVSAFSSSSPSLVIVLSLLLILFISEGVSGSTFTFLNRCDFTVWPGILDSAGSPKLETTGFVLPKGSSRGFQAPTGWSGRFWGRTGCNFDGSGHGTCATGDCGSGQVECNGAGASPPATLAEFTLGSGSQDYYDVSLVDGYNLPMMVEGRSKSGACTSTGCVTDLNRRCPNELKVEGGEACKSACEAFGSPEYCCSGAYNTPSTCKPSVYSEIFKSACPRSYSYAYDDATSTFTCNGADYTITFCPSSPSQKSSKDSPRETGTTPDSGSGSGSGSGPESESALASAEGTMLANSWLANLATGASGTARSHPCLTLHSGFVVAIFSLVLPFLVG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1315 335 Gene3D Thaumatin 33 248 IPR037176 -
Vvi4g1315 335 FunFam THAUMATIN-LIKE PROTEIN 1 33 248 - -
Vvi4g1315 335 ProSiteProfiles Thaumatin family profile. 32 248 IPR001938 -
Vvi4g1315 335 SUPERFAMILY Osmotin, thaumatin-like protein 34 249 IPR037176 -
Vvi4g1315 335 CDD TLP-PA 34 247 - -
Vvi4g1315 335 PANTHER OS03G0233200 PROTEIN 17 248 IPR001938 -
Vvi4g1315 335 Pfam Thaumatin family 39 248 IPR001938 -
Vvi4g1315 335 ProSitePatterns Thaumatin family signature. 95 111 IPR017949 -
Vvi4g1315 335 PRINTS Pathogenesis-related protein signature 133 149 IPR001938 -
Vvi4g1315 335 PRINTS Pathogenesis-related protein signature 34 46 IPR001938 -
Vvi4g1315 335 PRINTS Pathogenesis-related protein signature 82 93 IPR001938 -
Vvi4g1315 335 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Vvi4g1315 335 PRINTS Pathogenesis-related protein signature 95 124 IPR001938 -
Vvi4g1315 335 SMART tha2 35 248 IPR001938 -
Vvi4g1315 335 MobiDBLite consensus disorder prediction 249 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1315 Vvi-Chr4 20091365 20092562 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1315 18 269 Receptor kinase-like Gene Family AT5G38280 48.679 4.91e-79 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1315 - - vvi:100247111 643.269