Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1314 ATGGCTCCACCTCAAATTCCAATCCTGCTTCTCCAGCTCCTATTTCTCTTTTCAGGTGCATTTTCAGCGACATTTACGATAGTTAACAAGTGCAGCTACCCAGTGTGGCCGGGTATCTTATCAAACGCTGGAACAGCACAGCTCCCCACCACTGGTTTTGCTCTCCAACCTGATGAGTCCAATTCCCTATCCCTCCCTACTGCCTGGTCAGGTCGGTTGTGGGGTAGAACACTCTGTAGCGCCGACTCTGCTGGTAAGTTCACTTGTATCACCGGCGACTGCGGCTCCGGTACATTGGAATGCTCTGGTGGCGGTGCCGCCCCACCCGCCACCTTAGCAGAGTTCACCCTGAACGGCGCCAATGGCCTCGACTTCTATGATGTCAGCCTGGTGGACGGCTATAACCTCCCCATGTTGGTGGCACCTCAGGGTGGCACCGGGGGTAACTGTACTATCACCGGTTGCGTCGCTGACCTAAACGCGGCTTGTCCGTCGGAGCTCAAAGTGAGCAGCATCGAAGGCGGTGAGGGGAGTGAGAGCGTGGCATGCAAAAGCGCGTGTGAGGCGTTTGGGGATGCGCAGTACTGCTGCAGCGGGGCGTACGCGACTCCAGACACGTGTAAGCCCAGTGCATATTCTGAGTACTTCAAAAGCGCCTGCCCCCGTGCTTACAGCTACGCCTACGATGATGGTAGCAGCACCTTCACCTGTGCATCTGCCGATTACACCATCACTTTCTGCCCTTCTCCTGCCACCAGTCAGAAATCGGCGGGAGGGCAGTATCCTCAGGCGATGGAAGTCTCAGCGGCTGCTGCCAATCGTTTCACGTCATTCAACTCCATCATTGCCGTCGCTGTCGCCACCGTAGCCGCAATTTGGCAATGGCGGTAG 891 0.5657 MAPPQIPILLLQLLFLFSGAFSATFTIVNKCSYPVWPGILSNAGTAQLPTTGFALQPDESNSLSLPTAWSGRLWGRTLCSADSAGKFTCITGDCGSGTLECSGGGAAPPATLAEFTLNGANGLDFYDVSLVDGYNLPMLVAPQGGTGGNCTITGCVADLNAACPSELKVSSIEGGEGSESVACKSACEAFGDAQYCCSGAYATPDTCKPSAYSEYFKSACPRAYSYAYDDGSSTFTCASADYTITFCPSPATSQKSAGGQYPQAMEVSAAAANRFTSFNSIIAVAVATVAAIWQWR* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1314 296 PIRSF PR5 3 293 IPR001938 -
Vvi4g1314 296 ProSitePatterns Thaumatin family signature. 85 101 IPR017949 -
Vvi4g1314 296 SMART tha2 25 248 IPR001938 -
Vvi4g1314 296 SUPERFAMILY Osmotin, thaumatin-like protein 23 249 IPR037176 -
Vvi4g1314 296 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Vvi4g1314 296 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Vvi4g1314 296 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Vvi4g1314 296 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Vvi4g1314 296 PANTHER OS03G0233200 PROTEIN 10 248 IPR001938 -
Vvi4g1314 296 Gene3D Thaumatin 23 248 IPR037176 -
Vvi4g1314 296 ProSiteProfiles Thaumatin family profile. 22 248 IPR001938 -
Vvi4g1314 296 Pfam Thaumatin family 29 248 IPR001938 -
Vvi4g1314 296 CDD TLP-PA 24 247 - -
Vvi4g1314 296 FunFam THAUMATIN-LIKE PROTEIN 1 23 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1314 Vvi-Chr4 20085305 20086406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1314 8 254 Receptor kinase-like Gene Family AT5G38280 52.209 2.22e-88 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1314 - - vvi:100264253 575.089