Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1311 ATGGCTACTGCAGTCACTGCTGCAGTCTCTCTTCCCTCCTCTAAGACTACCTCTCTTTCAGCCAGAACCTCCATCATCTCACCAGAAAGAATCAGCCTTAAGAAGGTTCCTTTGTTTTACAGAGATATCTCTGCCGGTGGGAGAGTGGTTTCTATCAGAGCCCAGGTCACCACTGAGGCTCCTGCCAAGGTCGAGAAGATTTCCAAGAAAAATGAGGAAGGAGTGATTGTTAACAAGTTTAAGCCTAAGAATCCTTACATTGGCAGATGTCTTCTCAACACTAAGATCACCGGGGATGATGCTCCTGGAGAAACATGGCACATGGTCTTCAGCACCGAGGGAGAAGTTCCCTACAGAGAAGGGCAATCCATTGGGGTAATTGCAGATGGTGTTGACAAGAATGGGAAGCCTCACAAGCTGAGATTGTACTCAATTGCAAGCAGTGCCCTTGGTGACTTTGGAGACTCCAAAACTGTTTCTCTTTGTGTGAAACGGCTTGTCTACACCAATGAGAATGGGGAACTAGTTAAGGGAGTCTGCTCAAATTTCTTGTGTGACTTGAAGCCTGGGGCCGAAGTGAAGATTACAGGGCCTGTGGGGAAAGAAATGCTTATGCCAAAGGATCCAAATGCCACAATCATAATGCTTGCAACTGGAACTGGAATTGCTCCTTTCCGCTCATTCTTGTGGAAAATGTTCTTTGAGAAGCATGAAGACTACAAGTTCAATGGTTTGGCCTGGCTCTTCTTGGGTGTTCCCACAAGCAGCTCACTACTCTATAAGGAGGAATTCGAGAAAATGAAGGAGAAGAAGCCTGAGAACTTCAGGTTGGACTTTGCAGTGAGCAGAGAGCAATCAAATGCCAAAGGAGAGAAGATGTACATTCAGACCCGAATGGCTGAGTATGCAGAAGAACTCTGGGAATTACTGAAGAAAGACAACACCTATGTCTATATGTGTGGGCTCAAGGGCATGGAGAAGGGAATTGATGACATAATGGTGTCACTGGCTGCTAGAGATGGCATCGATTGGATCGAGTACAAGAGGCAGTTGAAAAGGGCAGAGCAATGGAATGTTGAAGTCTATTAA 1089 0.4591 MATAVTAAVSLPSSKTTSLSARTSIISPERISLKKVPLFYRDISAGGRVVSIRAQVTTEAPAKVEKISKKNEEGVIVNKFKPKNPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQSIGVIADGVDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGELVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKKPENFRLDFAVSREQSNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAARDGIDWIEYKRQLKRAEQWNVEVY* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1311 362 SUPERFAMILY Riboflavin synthase domain-like 62 206 IPR017938 -
Vvi4g1311 362 PANTHER - 3 362 IPR015701 GO:0016491
Vvi4g1311 362 PIRSF FNR-PetH 3 362 IPR035442 GO:0016491
Vvi4g1311 362 Pfam Oxidoreductase NAD-binding domain 215 329 IPR001433 GO:0016491
Vvi4g1311 362 CDD CYPOR_like_FNR 78 362 - -
Vvi4g1311 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 178 187 IPR001709 GO:0016491
Vvi4g1311 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 292 308 IPR001709 GO:0016491
Vvi4g1311 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 141 148 IPR001709 GO:0016491
Vvi4g1311 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 244 253 IPR001709 GO:0016491
Vvi4g1311 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 316 324 IPR001709 GO:0016491
Vvi4g1311 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 256 267 IPR001709 GO:0016491
Vvi4g1311 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 214 233 IPR001709 GO:0016491
Vvi4g1311 362 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 118 128 IPR001709 GO:0016491
Vvi4g1311 362 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 208 362 IPR039261 -
Vvi4g1311 362 Gene3D Translation factors 53 199 - -
Vvi4g1311 362 Gene3D - 200 362 IPR039261 -
Vvi4g1311 362 FunFam Ferredoxin--NADP reductase, chloroplastic 67 199 - -
Vvi4g1311 362 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 83 205 IPR017927 GO:0016491
Vvi4g1311 362 PIRSF Frd-NADP+_RD 1 362 IPR015701 GO:0016491
Vvi4g1311 362 FunFam Ferredoxin--NADP reductase, chloroplastic 200 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1311 Vvi-Chr4 20077272 20079548 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1311 K02641 - vvi:100241976 719.153