Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1309 ATGGCGGACATGGTGAAGGAGATCTTGGGGAAGCCGATCCAATTAGCGGACCAGGTGATAAAGGCGGCGGGGCAAGCCAGTTCCAGTAAGCCTGAGTGTGGGGAGTTGAAGGCGAAGACCGAGAAGCTTGCCCAACTCCTCCGCCAAGCGGCTAGAGCGAGCTCCGATTTATACGAACGTCCCACTCGCCGCATCATCGATGAGACGGTGCAAGTCCTGGATAAGGCTCTATCGCTGGTGCTCAAGTGTCGGGCTAATGGCCTTATGAAGCGAGTCTTTACCATCATCCCCAACGCCGGCTTCCGGAAAATGTTGGCGCAGCTCGATAATTGTATCGGAGATGTGTCCTGGCTGCTTCGAGTCTCCGCATCAGGGGATGATCGAGACAATGGATGCCTGGGTCTGCCTCCTATAGCGGCGAACGAGCCCATTCTGTGCCTTATTTGGGAACATATTGCGATTCTTTACACGGGATCACTGGAAGATCGGTCCGATGCGGCTGCTGCTTTGGTTTCGTTGGCTAGGGATAATGATAGGTACGGGAAATTGATTATCGAGGAAGGTGGGGTTGTACCCTTGTTGAAACTGATGAAGGAGGGCCGTGTGGAAGGGCAAGAGAATGCGGCTCGGGCGATTGGGTTGCTAGGGCGTGACCCGGAGAGCATCGAACAGATGATCCATGCGGGTGCGTGTTCGGTGTTCGCAAAAGTCCTCAAAGAAGGTCCCATGAAGGTGCAGGCGGTGGTGGCTTGGGCTGTGGCAGAGCTCACAGCGAATTACCCGAAATGCCAAGATCTTTTTGCGCAGCACAACATAATTCGCTTGCTGGTTGGGCATCTCGCATTTGAGACGATTCAAGAGCACAGCAAGTATGCAATTACCACCAACAAGGCCACATCCATCCATGCTGTTGTGATGGCGAGTAACAATTCGAATGCCACTGCTCTGAACAAGGGGGGGACTGATCATGACGATGATAGGCACACTCAAATCCCTCGTCCTGTGGGAAACCAGAATCCCAATCAGATGCAGAAGGTGGTCACTAATACTATGGCAATGAACTCTCAATCCAAACTTTCTCAGCGGCTCAACAATGGGGCAAATCAAACCAACCATGTCAACTCTGAAAACGCTAAGTATAATCATCAGCACCACCACCATACATATTCTGGTCACGGCATTAAAGGGAGGGAACTTGAAGACCCAGCTACCAAGGCCGAGATGAAATCAATGGCAGCAAAAGCCCTTTGGCACCTCGCCAAGGGAAACTCGCACATCTGCCGAAACATCACCGAGTCAAGAGCCCTCTTATGCTTTGCTGTCCTCCTGGAGCAAGGAATTGGCGAGGTTAAACTGCACTCTGCTATGGCGTTGATGGAGATTACAGCTGTGGCAGAGCAAGACACTGAACTAAGAAGGTCAGCATTCAAACCCAATTCCCCTGCTTGCAAAGCTGTTGTGGATCAGTTACTACAGATCATTGAAAAGGCAGATTCCGAGCTCCTTATCCCATGTGTGAAGGCTATTGGGAATTTAGCAAGAACATTTAAAGCAACTGAAACAAGAATGATAAGTCCATTGGTGAGGCTACTTGACGAGAGAGAAGCTGAGATTTCTAGGGAGGCTTCAATTGCCCTCACAAAGTTTGCCTGCACTGATAACTATCTCCATACTGATCACTGCAAGGCAATCATAAGTGCTGGAGGGGCCAAGCACTTGGTCCAGCTTGTGTATTTTGGGGAGCAAATAGTTCAAATTTCTGCATTAGTCCTCCTATGCTACATTGCTTTACATGTACCAGACAGTGAAGAACTTGCCATGGCTCAGGTCCTTACTGTGCTGGAATGGGCATCAAAGCAAGGGTGGTTCATGGTCCAAGATGAAACAGTGGAGTCATTGCTGGATGAGGCCAAAAAAGGATTGAAGCTCTACCAATCCAAAGCTTAA 1947 0.4997 MADMVKEILGKPIQLADQVIKAAGQASSSKPECGELKAKTEKLAQLLRQAARASSDLYERPTRRIIDETVQVLDKALSLVLKCRANGLMKRVFTIIPNAGFRKMLAQLDNCIGDVSWLLRVSASGDDRDNGCLGLPPIAANEPILCLIWEHIAILYTGSLEDRSDAAAALVSLARDNDRYGKLIIEEGGVVPLLKLMKEGRVEGQENAARAIGLLGRDPESIEQMIHAGACSVFAKVLKEGPMKVQAVVAWAVAELTANYPKCQDLFAQHNIIRLLVGHLAFETIQEHSKYAITTNKATSIHAVVMASNNSNATALNKGGTDHDDDRHTQIPRPVGNQNPNQMQKVVTNTMAMNSQSKLSQRLNNGANQTNHVNSENAKYNHQHHHHTYSGHGIKGRELEDPATKAEMKSMAAKALWHLAKGNSHICRNITESRALLCFAVLLEQGIGEVKLHSAMALMEITAVAEQDTELRRSAFKPNSPACKAVVDQLLQIIEKADSELLIPCVKAIGNLARTFKATETRMISPLVRLLDEREAEISREASIALTKFACTDNYLHTDHCKAIISAGGAKHLVQLVYFGEQIVQISALVLLCYIALHVPDSEELAMAQVLTVLEWASKQGWFMVQDETVESLLDEAKKGLKLYQSKA* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1309 648 FunFam Armadillo repeat only 2 386 641 - -
Vvi4g1309 648 PANTHER ARMADILLO REPEAT ONLY 4 1 647 - -
Vvi4g1309 648 Gene3D - 395 635 IPR011989 -
Vvi4g1309 648 SMART arm_5 218 258 IPR000225 GO:0005515
Vvi4g1309 648 SMART arm_5 557 597 IPR000225 GO:0005515
Vvi4g1309 648 SMART arm_5 479 514 IPR000225 GO:0005515
Vvi4g1309 648 SMART arm_5 176 217 IPR000225 GO:0005515
Vvi4g1309 648 Pfam Armadillo/beta-catenin-like repeat 183 214 IPR000225 GO:0005515
Vvi4g1309 648 FunFam Armadillo repeat only 2 150 318 - -
Vvi4g1309 648 FunFam Armadillo repeat only 4 2 121 - -
Vvi4g1309 648 SUPERFAMILY ARM repeat 153 614 IPR016024 -
Vvi4g1309 648 Coils Coil 36 56 - -
Vvi4g1309 648 Gene3D - 3 121 IPR036537 GO:0007166
Vvi4g1309 648 Gene3D - 151 321 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1309 Vvi-Chr4 20052330 20054276 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1309 - - vvi:100253942 1257.28