Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1306 ATGAGCTTCTCAAGGTTGACAGTGAGGGCCGTTGCATTATCACGGATCATGGTCATTTTGTTCTTTTCAATATATATGGGCCCCGAGCTGACTCTGAGGATACAGAAAGGATTCAGTTTAAGCACACTTTTTTCCAGATATTACAGATGGGAGACTCTCCAGCAGCAGGGGAGGAGGATATTTGTTGTTGGTGATCTTAATATTGCTCCTGCTGCTATAGATCGCTGTGATGCTGGACCAGATTTTGAGAAGAATGAGTTCAGGAGATGGTTTAGATCTATGCTAGTGGAATGTGGAGGCCCTTTCTTTGATGTTTTTAGAGCAAAACATCCTGACAGAAGAGAAGCATACACATGCTGGTCATCGAGCACAGGTGCAGAGGAATTCAATTATGGGTCAAGAATTGACCATATTCTCAGTTCTGGGTCATGCTTACATCAAGACCATTGCCTGCAAGATCGTATCTTTGTTACTTGCCATGTTAAAGAATGTGACATATTGACTCAGTTTAAGCGATGGAAGCCTGGAAACAAACCCAGGTGGAAAGGAGGGAGAAGCATCAAACTAGAAGGTTCTGATCATGCTCCTGTTTTTATGAGTTTAATGGATATCCCTGATGTTGCGCAGCATAGTACTCCATCTTTGTCTGCTAGATATGTTCCTACGGTTCATGGGTTCCAGCAAACTATTGCATCAGTATTAATGAAAAGACAAAAGGCTGAGCAAGTAAAGACCTTCGAGGTATCAAGTTCATTTTCAGATGAAAATATTACAACTAGAAGTTGCAGTGAGATTCTGAAAAGATCATCCCAAGACTGCTGTATATCTGACCTGCCTTCAGGCGACTTTCTGTCTTCTTCAAATCTGCAATCAGAAGGTGTCATTCCAAGACTGGATGGGCCCTCCATATGTTCCATTAGTGATTCTTCCAATAGAATTATAACCGCCTCAATAATCAGGCAAACAAAATCAACGCCTGGCACAGTAACAAAGAAAAAAGCAAGACAAAGTCAATGCTCCCAACTCTCTCTGAAGTCATTTTTCCAGAAAAGTTCCAACGTTAAAGATGGTGTTGATAATGCTGCAGCTGATGCGTCACTTGATCAGGCAGATGAGTCAAAGTCTAATCAGAACCCCAACAAGACTTCTATGGGTGATGATGAAAGCAAGAGTTCAAAGATGGTGGAGTTGGATGTTAGTGCATCCAATCAGGAACAAGGTGTGGTAATTTCCGGCAGTTCCCCGCAAAGGGATAAAAATGATATAGCTTTAGTGGAGTGGCAAAGGATTCAACAACTCATGCAGAACAGCATACCTCTTTGTAAGGGCCATGGTGAACCCTGTGTTTCTCGGTTAGCTAAGAAACCTGGTCCAAATCATGGACGCAGGTTTTATGTCTGTGCTCGGGCTGAGGGACCAGCGTCTAATCCTGAAACAAATTGCGGTTACTTCAAGTGGGCTGCTTCAAAATCTAGGCACAGATGA 1485 0.4269 MSFSRLTVRAVALSRIMVILFFSIYMGPELTLRIQKGFSLSTLFSRYYRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFFDVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKECDILTQFKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPTVHGFQQTIASVLMKRQKAEQVKTFEVSSSFSDENITTRSCSEILKRSSQDCCISDLPSGDFLSSSNLQSEGVIPRLDGPSICSISDSSNRIITASIIRQTKSTPGTVTKKKARQSQCSQLSLKSFFQKSSNVKDGVDNAAADASLDQADESKSNQNPNKTSMGDDESKSSKMVELDVSASNQEQGVVISGSSPQRDKNDIALVEWQRIQQLMQNSIPLCKGHGEPCVSRLAKKPGPNHGRRFYVCARAEGPASNPETNCGYFKWAASKSRHR* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1306 494 Pfam GRF zinc finger 439 488 IPR010666 GO:0008270
Vvi4g1306 494 PANTHER AP ENDONUCLEASE 39 203 IPR004808 GO:0004518|GO:0006281
Vvi4g1306 494 MobiDBLite consensus disorder prediction 369 385 - -
Vvi4g1306 494 ProSitePatterns AP endonucleases family 1 signature 3. 130 141 IPR020848 GO:0003677|GO:0004519|GO:0006281
Vvi4g1306 494 Gene3D Endonuclease/exonuclease/phosphatase 33 202 IPR036691 -
Vvi4g1306 494 ProSiteProfiles Zinc finger GRF-type profile. 441 490 IPR010666 GO:0008270
Vvi4g1306 494 SUPERFAMILY DNase I-like 19 200 IPR036691 -
Vvi4g1306 494 Pfam Endonuclease/Exonuclease/phosphatase family 51 142 IPR005135 GO:0003824
Vvi4g1306 494 MobiDBLite consensus disorder prediction 364 394 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1306 K10772 - vvi:100264349 914.835