Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1302 ATGGCGCCTACGACACTGACGGCTCTTGCAGGCGAGAAGACTCTTCAGTCGAGCTTCGTCCGTGACGAAGATGAACGTCCCAAGGTGGCCTACAACGACTTCAGCAACGAAATTCCTGTCATCTCTCTCGAAGGAATCGATGAAGTTGGCGGCCGTCGTGATGAGATTTGCAGGAAAATCGTGGAGGCCTGCGAGGACTGGGGGATTTTCCAAGTTGTTAATCACGGTGTTGATTCTAATCTCATTTCGGAGATGACTCGCCTGGCTCGGGAATTCTTCGCTCTTCCGCCGGAGGAGAAGCTCCGCTTCGACATGTCTGGTGGCAAGAAAGGCGGCTTCATCGTTTCCAGCCATCTTCAAGGAGAAGCAGTGCAAGACTGGCGCGAGATCGTAACCTACTTCTCCTACCCACTACGAACCAGGGACTACTCGAGGTGGCCAGACAAGCCAGAGGGGTGGAGATCGGTGACACAGGAGTACAGCGAGAAGCTCATGGGGTTGGCCTGCAAGTTGCTGGAGGTGTTGTCTGAGGCCATGGATTTGGACAAGGACGCTTTGACCAATGCTTGTGTGGACATGGACCAGAAGGTTGTGGTCAATTTCTACCCCCAATGCCCACAGCCAGACCTCACCCTCGGACTCAAGCGGCATACCGATCCGGGAACCATCACGCTGCTCCTTCAGGATCAGGTGGGAGGGCTCCAGGCCACTAGGGATGGCGGAAAGACTTGGATCACCGTTCAACCTGTTGAAGGAGCTTTCGTCGTCAACCTTGGCGACCACGGTCATTATCTGAGCAATGGGAGGTTCAAGAATGCTGATCACCAAGCGGTGGTGAACTCCAATCATAGCAGACTGTCCATAGCAACATTCCAAAACCCCGCACCGGAGGCAACCGTGTATCCTCTGAAGATAAGAGAGGGAGAGAAGGCAGTGCTTGAGGGACCCATCACCTTTGCAGAGATGTACAGGAGGAAGATGAGCAAAGATCTGGAGCTTGCTAGGCTCAAGAAGTTGGCCAAGGAGCAGCAGTTGCAAGACGTGGAGAAGGCCAAGTTAGAGTCCAAGCCCATTGACCAGATTTTGGCCTAA 1092 0.5375 MAPTTLTALAGEKTLQSSFVRDEDERPKVAYNDFSNEIPVISLEGIDEVGGRRDEICRKIVEACEDWGIFQVVNHGVDSNLISEMTRLAREFFALPPEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPLRTRDYSRWPDKPEGWRSVTQEYSEKLMGLACKLLEVLSEAMDLDKDALTNACVDMDQKVVVNFYPQCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSNHSRLSIATFQNPAPEATVYPLKIREGEKAVLEGPITFAEMYRRKMSKDLELARLKKLAKEQQLQDVEKAKLESKPIDQILA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1302 363 Gene3D - 5 333 IPR027443 -
Vvi4g1302 363 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 190 294 IPR005123 -
Vvi4g1302 363 FunFam Naringenin,2-oxoglutarate 3-dioxygenase 6 333 - -
Vvi4g1302 363 Pfam 2OG-Fe(II) oxygenase superfamily 195 293 IPR044861 -
Vvi4g1302 363 SUPERFAMILY Clavaminate synthase-like 8 329 - -
Vvi4g1302 363 Coils Coil 331 351 - -
Vvi4g1302 363 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 35 298 - -
Vvi4g1302 363 Pfam non-haem dioxygenase in morphine synthesis N-terminal 38 148 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1302 Vvi-Chr4 19929695 19931198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1302 37 304 Glycosyltransferase AT5G59530 33.818 6.12e-45 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1302 K00475 - vvi:100233079 721.079