Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1297 ATGGAGAAATCCAAAGGAAGAAGGAGGAACATGATGAAGAGCCACTTATGCATCCCCAGGCTCATGAGGAGCAACACCTCCTGCAAAAGCAGCAGCAGCACCACCAACAACCGGTTGTCGCCAGCGATGTCGCTTCTGGAACGTTTCCGGGAAGCGGTGTTTCGGTTGATCATGTTGACTGCTCTGTCTAAGGCCACAAGCCATAGTGGATCCCGCGACGTGCCGCGGTCTTACTACCCAAATGAACCCCACCACAGCGAAGCCGTTGCCGACTGCATAGAGTTCATAAAGAAATCTGCGTCGCCGGGGGATAACCGTGACTCCACTGCTAGCAGTTCCATGGATACGGCCATGCCCGTGCCGTACAATTCGGAAGTTAGCAGGGCTTTGCCGCCTTTATGCAAAGCTGTAGAATTCGAAGGCTTCACAACGACAAATCAAATGGCTGGAGGGCAGGGCCAATCAGAAAGAGAAGACAAGGTTGCTCTAGAGCTCACTGAAGAAATCTTTCAGAGCATGGAAGTTGGCATGGCTTTTCGTGATTATAGTGGTAGGATCAGTTCAATGGATTTTCATAGGACATCAAGTTATCTAGTGACTGCTAGTGACGATGAATCCATTCGCCTGTATGATGTCGCCACTGGAACATGTTTGAAGACAATTAATAGCAAAAAGTATGGGGTTGATCTGGTCTGCTTCACTTCTGATCCTACAACAGTTATATACTCCTCAAAAAATGGTTGGGATGAATCTTTGCGGCTTCTTTCATTGCATGACAACAAGTATTTGCGTTACTTTAAAGGTCACCATGACAGGGTTGTCTCTCTTAGCTTGTGCTCTCGAAAAGAATGTTTTATCTCTGGCTCACTTGATCGAACTGTTTTACTTTGGGATCAACGAGCTGAGAAGTGTCAGGGTCTTTTACGTGTGCAAGGAAGGCCTGCTACAGCTTATGATGATCAAGGGTTAGTCTTTGCAATTGCATTTGGAGGATACGTAAGACTGTTTGATGCTCGCAAGTATGATAAGGGTCCTTTTGAAATCTTCTCTGTTGGGGGAGATATATCTGATGCAAATGTTGTCAAGTTCAGTAATGATGGGAGGCTTATGCTTTTAACTACTATGGATGGACATATTCATGTACTTGATTCATTCCGTGGCACGCTTCTATCCACATACAATGTCAAGCCAGTTTCAAGCACTTCCACTTTAGAAGCATCCTTCAGTCCCGAGGGAATGTTCGTTATATCAGGCTCAGGTGATGGGAGTGTCTATGCATGGAGTGTACGGAGTGGCAAAGAAGTTGCAAGCTGGATGAGCACTGAAACTGAACCTCCTGTCATAAAATGGGCTCCTGGAAGTCTGATGTTTGTGACTGGCTCTTCTGAATTATCATTTTGGATTCCAGACTTATCTAAATTGGGAGCTTATGCTGGAAGAAAGTAG 1446 0.4571 MEKSKGRRRNMMKSHLCIPRLMRSNTSCKSSSSTTNNRLSPAMSLLERFREAVFRLIMLTALSKATSHSGSRDVPRSYYPNEPHHSEAVADCIEFIKKSASPGDNRDSTASSSMDTAMPVPYNSEVSRALPPLCKAVEFEGFTTTNQMAGGQGQSEREDKVALELTEEIFQSMEVGMAFRDYSGRISSMDFHRTSSYLVTASDDESIRLYDVATGTCLKTINSKKYGVDLVCFTSDPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDDQGLVFAIAFGGYVRLFDARKYDKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTMDGHIHVLDSFRGTLLSTYNVKPVSSTSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTETEPPVIKWAPGSLMFVTGSSELSFWIPDLSKLGAYAGRK* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1297 481 FunFam protein ANTHESIS POMOTING FACTOR 1 isoform X1 169 468 - -
Vvi4g1297 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 407 437 IPR001680 GO:0005515
Vvi4g1297 481 MobiDBLite consensus disorder prediction 102 119 - -
Vvi4g1297 481 SUPERFAMILY WD40 repeat-like 179 467 IPR036322 GO:0005515
Vvi4g1297 481 SMART WD40_4 386 428 IPR001680 GO:0005515
Vvi4g1297 481 SMART WD40_4 344 383 IPR001680 GO:0005515
Vvi4g1297 481 SMART WD40_4 259 298 IPR001680 GO:0005515
Vvi4g1297 481 SMART WD40_4 172 211 IPR001680 GO:0005515
Vvi4g1297 481 SMART WD40_4 214 249 IPR001680 GO:0005515
Vvi4g1297 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Vvi4g1297 481 PANTHER WD40 REPEAT PROTEIN SWD2 159 473 IPR037867 -
Vvi4g1297 481 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Vvi4g1297 481 PRINTS G protein beta WD-40 repeat signature 415 429 IPR020472 -
Vvi4g1297 481 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Vvi4g1297 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 215 - -
Vvi4g1297 481 Gene3D - 166 468 IPR015943 GO:0005515
Vvi4g1297 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Vvi4g1297 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Vvi4g1297 481 Pfam WD domain, G-beta repeat 262 298 IPR001680 GO:0005515
Vvi4g1297 481 Pfam WD domain, G-beta repeat 407 427 IPR001680 GO:0005515
Vvi4g1297 481 Pfam WD domain, G-beta repeat 183 211 IPR001680 GO:0005515
Vvi4g1297 481 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1297 Vvi-Chr4 19841324 19851280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1297 263 467 Miscellaneous Gene Families AT5G08390 23.474 2.04e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1297 K14962 - vvi:100255744 673.315