Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1295 ATGTGTTTCATCAAAACGACCTCTTATTCAATTCTCCCAGTTGACTTACCTCAGAAAGCTATGAGCGATCCCCGGGTGGAAACCCTTGACTCTTTCCTGCGGGGTTACCAGCGATCCGAACTCAGAATCGCATCCGAGTTCCTCACCACGTGGCTTCCTTTCCTCTCTAGAGATCTCTGTCACCACTGCGCTGAAACTCTCTCCGATCGAATCCGTTCTATTGGCCCTGAGGTTCATGGTGACGCGGAAAATTTGCCAAAGGATGAGAATGTAACTGTTTCGACCCCAGATATTATGCGATTGAAGAAGCACATTGACAGTCATTGTGATAATTGTGACTCCAATTCGCTGGGCAGTTGGAAAGATAACGATGCTGACACGAATTCGGTTGGGAGTTTTAAAGATGAGGTGAACGAGTGGTCTGAACCTGTCCCTGAAGCTTCTACAAGTGAATTAGCGTCTGAATCCCCCTCAATTGAAACTCCTAGTCCCCGCATATCTTGGGCTGATATGGCACAGGAAGACGAGCTCGAGGAGGAAGAGGAACATGAAGCTAACAAGCGGTCCATTGATGAGAATTCATCAACAGGGGAAGTTGGTGTCTCAAAGGTTCCACGAAAGGCTGAACTGCCAAGGGAACAGAGAGAGTATATTCGGTTTAGGAATGTCCAAAGGAAGAAAGATTTTATTTGTCTGGAGAGAGTTAAAGGGAAATTTGTTAATATTCTTGATGGGCTTGAGCTCCATGTGGGTATTTTTAGTGCAGCAGAGCAGAAAAGGATAGTTGACTTTATATATGAACTTCAGGAGATGGGAAGGAATGGCCAATTGAAAGAGCGCACATATTCCGCTCCCCAAAAGTGGATGAGAGGCAAGGGACGTGTGACTATCCAATTTGGTTGCTGCTATAATTATGCAACAGATAAAAATGGTAATCCACCAGGCATCCTTCAAAATGAGGTTGTAGATCCTATACCTCCTCTTTTCAAGGTGATCATTAGGAGGCTGGTTAGATGGCATGTTCTTCCTCCATCCTGTGTGCCTGACAGTTGCATTGTCAATATCTATGAAGAAGGGGATTGCATACCTCCTCACATCGACAACCATGATTTTGTTCGGCCTTTTTGTACTGTATCATTTCTCAGTGAGTGTGATATTGTTTTTGGAACAAACCTGAAGATTTTGGGTGCTGGTGAGTTTGTTGGTCCCTTCGCAATTCCCTTGCCTGTGGGTTCTGTTCTTGTCTTAAATGGAAATGGCGCTGATGTAGCTAAGCATTGTGTGCCTGCTGTTCCTAGTAAAAGGATATCAATTACTTTCCGGAAAATGGATGAATCTAAACGCCCTATTGGGTATCTTCCTGAACCTGATTTACAAGGACTTCAGCCAGTATCCTATGAAATGGACAGATCAAAGATATCAAATCCTCAAAAACCAGAGCGCCGCATGAACAGACAGGCAGTTAGAAGAGAGGGTAGTGTAGAAGCGAGGGGTTTTATGGAGAGAGGTGACCATTCAGGGTCTCACTACTCAAGTCGGGCTCCAAGAGGGCCTGCAAATAGGCGGAGGATCAGGATGAATTTGGCTGATTGA 1593 0.4501 MCFIKTTSYSILPVDLPQKAMSDPRVETLDSFLRGYQRSELRIASEFLTTWLPFLSRDLCHHCAETLSDRIRSIGPEVHGDAENLPKDENVTVSTPDIMRLKKHIDSHCDNCDSNSLGSWKDNDADTNSVGSFKDEVNEWSEPVPEASTSELASESPSIETPSPRISWADMAQEDELEEEEEHEANKRSIDENSSTGEVGVSKVPRKAELPREQREYIRFRNVQRKKDFICLERVKGKFVNILDGLELHVGIFSAAEQKRIVDFIYELQEMGRNGQLKERTYSAPQKWMRGKGRVTIQFGCCYNYATDKNGNPPGILQNEVVDPIPPLFKVIIRRLVRWHVLPPSCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECDIVFGTNLKILGAGEFVGPFAIPLPVGSVLVLNGNGADVAKHCVPAVPSKRISITFRKMDESKRPIGYLPEPDLQGLQPVSYEMDRSKISNPQKPERRMNRQAVRREGSVEARGFMERGDHSGSHYSSRAPRGPANRRRIRMNLAD* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1295 530 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 39 476 IPR044842 GO:0003729|GO:0006402|GO:0032451
Vvi4g1295 530 MobiDBLite consensus disorder prediction 136 203 - -
Vvi4g1295 530 MobiDBLite consensus disorder prediction 473 509 - -
Vvi4g1295 530 SUPERFAMILY Clavaminate synthase-like 242 443 - -
Vvi4g1295 530 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 347 444 IPR005123 -
Vvi4g1295 530 MobiDBLite consensus disorder prediction 469 530 - -
Vvi4g1295 530 MobiDBLite consensus disorder prediction 143 163 - -
Vvi4g1295 530 Pfam 2OG-Fe(II) oxygenase superfamily 246 441 IPR027450 -
Vvi4g1295 530 Gene3D - 230 449 IPR037151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1295 Vvi-Chr4 19828896 19833451 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1295 K10767 - vvi:100250563 1037.33