Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1293 ATGGGCGAAGGCAGAGAGGGAGATTGGGAGTGCAGCGGATGCAGAAACAGAAACTACGCCTTCAGATCCTTCTGCAACCGATGCAAGCAGCCTCGCCTCCTCGTCGACACCAAAACCCCCGCCGATTCCAAATGGCTTCCTCGCATCGGAGATTGGATCTGCACCGGTTGCACTAACAACAATTATGCGTCACGAGAAAAGTGCAAAAAGTGCGGACAACCAAAGGAGATAGCAGCAATGCCAGCGATTGCAATGCCTGGAGCTTCTCTCCCAACTTATGCGCATTATTTTGCCAGGGCGCAAGGAGGACCCGAACAAAAGATGAACATTGGATTAATGAGCAACGGTGCTCTTCAGCAGCCACTTCCTTTGAGCTCGACCTGGTCTGTAGGAGGTCCTGATAAATATGGAGGCCAACCAGCTCCAACATGGCCCCTAGGTGGAAACCCTAGCCCTGCACTTCCATTTCCAAACCATGCAAATCAGCTCCTTATGGTTCCTAAAGGATGGCGCAATGGTGACTGGATATGCAACTGTGGCTTCCATAATTATTCTTCTCGTGCACAGTGCAAAAAATGCAATGCTTCAATGCCACCAGCACTTGGAATGAAGAGATTAGCATCAGAAGAGTTTGTTCGTGACTGGGATAGCAAGAGATTGAATGCCGGACATGCAAATGGACAGCAGCCATCATACCCAGGATTTGAGCAACTGGCAGGTTCCAGTGTTGATCCAAAAGGTGTGGCTTATGCCCCCTATCCTAGTGTAACCCCAGTGGCACCTCCAAATTTGCAAGTGCCAATGCAGTTCCCACATCAAACAACAACACCTACACTCCTTGGGAAAGGAGCAAAGCAATGGCGTGATGGGGACTGGATGTGCACAAATTGCAACAATCATAATTTTGCATCTCGATCCCAGTGCAATAGGTGTAAAACTCAAAGAGACGCCCTCGCGCAGCCTGTCAGCGTTGCATAG 978 0.4969 MGEGREGDWECSGCRNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREKCKKCGQPKEIAAMPAIAMPGASLPTYAHYFARAQGGPEQKMNIGLMSNGALQQPLPLSSTWSVGGPDKYGGQPAPTWPLGGNPSPALPFPNHANQLLMVPKGWRNGDWICNCGFHNYSSRAQCKKCNASMPPALGMKRLASEEFVRDWDSKRLNAGHANGQQPSYPGFEQLAGSSVDPKGVAYAPYPSVTPVAPPNLQVPMQFPHQTTTPTLLGKGAKQWRDGDWMCTNCNNHNFASRSQCNRCKTQRDALAQPVSVA* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1293 325 SMART zf_4 290 314 IPR001876 -
Vvi4g1293 325 SMART zf_4 7 31 IPR001876 -
Vvi4g1293 325 SMART zf_4 173 196 IPR001876 -
Vvi4g1293 325 SMART zf_4 50 74 IPR001876 -
Vvi4g1293 325 SUPERFAMILY Ran binding protein zinc finger-like 5 33 IPR036443 -
Vvi4g1293 325 FunFam Zinc finger, RanBP2-type protein 1 33 - -
Vvi4g1293 325 ProSitePatterns Zinc finger RanBP2-type signature. 52 71 IPR001876 -
Vvi4g1293 325 ProSiteProfiles Zinc finger RanBP2 type profile. 48 77 IPR001876 -
Vvi4g1293 325 SUPERFAMILY Ran binding protein zinc finger-like 169 196 IPR036443 -
Vvi4g1293 325 PANTHER ZINC FINGER PROTEIN 49 75 - -
Vvi4g1293 325 Pfam Zn-finger in Ran binding protein and others 288 315 IPR001876 -
Vvi4g1293 325 Pfam Zn-finger in Ran binding protein and others 48 76 IPR001876 -
Vvi4g1293 325 Pfam Zn-finger in Ran binding protein and others 5 32 IPR001876 -
Vvi4g1293 325 Gene3D - 283 317 - -
Vvi4g1293 325 Gene3D - 168 199 - -
Vvi4g1293 325 Gene3D - 3 33 - -
Vvi4g1293 325 Gene3D - 42 77 - -
Vvi4g1293 325 ProSiteProfiles Zinc finger RanBP2 type profile. 171 199 IPR001876 -
Vvi4g1293 325 SUPERFAMILY Ran binding protein zinc finger-like 42 76 IPR036443 -
Vvi4g1293 325 ProSitePatterns Zinc finger RanBP2-type signature. 9 28 IPR001876 -
Vvi4g1293 325 ProSiteProfiles Zinc finger RanBP2 type profile. 5 34 IPR001876 -
Vvi4g1293 325 ProSiteProfiles Zinc finger RanBP2 type profile. 288 317 IPR001876 -
Vvi4g1293 325 FunFam Zinc finger, RanBP2-type protein 42 76 - -
Vvi4g1293 325 SUPERFAMILY Ran binding protein zinc finger-like 282 316 IPR036443 -
Vvi4g1293 325 ProSitePatterns Zinc finger RanBP2-type signature. 292 311 IPR001876 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1293 - - vvi:100245437 700.279