Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1290 ATGGAAACTGAGCCAAAAAAGTCGAAAGGCTGGTGCTGGTGGATTTTAGTGTTAGCCATTGCGGCTATGGTGGTGGCATCGGCTACACTAACTATTTGGAGTAACGGTCGCCACTCCAAGGTGTCCTCAGTTCCAGATCGTCCGGGCAAAATTGCAGAGAACTATGCGGATGCTCTTAAGATTGCTATTCAGTTCTTCGACATCCAAAAATCTGGTAAATTGGTGAATAACAAGATTGATTGGAGAGGTGACTCGGGATTAGAAGATGGACGTGAAGAAATGTTGGATCTATCAAAAGGAATGTATGATGCAGGGGATCATATGAAGTTTGGATTCCCCATGGCTTTTACTGCAACAGTGCTGTCCTGGGCCATTCTTGAATATGGAGATCATATGAAGGCAGTGAAGCAGCTGGGTAATGCCCAAGCTTCACTTAAATGGATCACAGATTACCTTATCAATGCCCATCCTTCCCCAAACCTGCTCTATGTTCAGGTAGGTGATCCAGAATTGGACCACGAATGTTGGGAAAGGCCTGAAGCCATGACGGAGAAAAGGCCGGTCACACAGGTGAACACATCATTTCCAGGAACAGAGGTTGCAGCAGAGACAGCAGCAGCTATGGCATCGGCATCTCTAGTTTTCAAGAAAATCAACTCCAGTTATTCAAATTTGCTCCTTAAGCATGCCCAGCAACTGTTTACCTTTGCTGACACTAACAGAGGTTCTTACAGTGTCAGCATTCCCCAAGTGCAGCCATACTACAACTCTACGGGATATGGAGATGAACTCTTGTGGGCAGCTTCCTGGCTCTTTCATGCAACCAGAGATGAGTCATATCTCAGATACGTGACTCTACAAAATGGGGATGCATTCGCTAGATGGGGAACTCCCACTTGGTTCAGCTGGGATGACAAGCTTGCTGGGACTCAGGTTCTGCTGTCCAGGGTAAACTTCTTTGATACAACAGAGATCTCAGATGGAGAAAATATTGGCCTGCAGATGTATAGAAAAACTGCAGAAGCTGTTATATGTGGGCTTTTACCAGATTCGCCAACAGCCACATCCAGCAGAACAGACAGTGGCCTGATATGGGTAACCGAGTGGAACCCTCTGCAGCATTCCGTGGCTTCTGCCTTCCTAGCTGTTATTTATAGTGATTACATGCTTACATCCAAGACAGAAACCCTCTACTGCAGTGGGAAACACTACAAGCCAGCAGACCTTCGCAAATTTGCCATTTCGCAGACTGAGTATGTGTTGGGGAACAATCCCATGAACATGTGCTATCTTGTTGGGCATGGGAGCAACTACCCACAGTATGTTCACCACAGGGGAGCTTCAATTCCTGTTGATGCGGAGACTGGCTGCCACGATGGGTTCAAGTGGCTTGAGTCACTTGACCCCAATCCAAATCTAGCGGTGGGAGCACTAGTGGGCGGGCCATTCCTGAATGAGACCTACATTGATTCCCGGAACAACACAATGCAAGGTGAGCCAAGCACTTACAACAGTGCCCTCCTTGTAGGCCTTCTCTCAGGCTTGCTCACCAGTTCTTCAGTAGTATCTTCTTTCTCTTGA 1581 0.4719 METEPKKSKGWCWWILVLAIAAMVVASATLTIWSNGRHSKVSSVPDRPGKIAENYADALKIAIQFFDIQKSGKLVNNKIDWRGDSGLEDGREEMLDLSKGMYDAGDHMKFGFPMAFTATVLSWAILEYGDHMKAVKQLGNAQASLKWITDYLINAHPSPNLLYVQVGDPELDHECWERPEAMTEKRPVTQVNTSFPGTEVAAETAAAMASASLVFKKINSSYSNLLLKHAQQLFTFADTNRGSYSVSIPQVQPYYNSTGYGDELLWAASWLFHATRDESYLRYVTLQNGDAFARWGTPTWFSWDDKLAGTQVLLSRVNFFDTTEISDGENIGLQMYRKTAEAVICGLLPDSPTATSSRTDSGLIWVTEWNPLQHSVASAFLAVIYSDYMLTSKTETLYCSGKHYKPADLRKFAISQTEYVLGNNPMNMCYLVGHGSNYPQYVHHRGASIPVDAETGCHDGFKWLESLDPNPNLAVGALVGGPFLNETYIDSRNNTMQGEPSTYNSALLVGLLSGLLTSSSVVSSFS* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1290 526 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 419 445 IPR018221 -
Vvi4g1290 526 Gene3D - 51 519 IPR012341 GO:0005975
Vvi4g1290 526 PANTHER ENDO-1,4-BETA-GLUCANASE 18 517 - -
Vvi4g1290 526 FunFam Endoglucanase 51 520 - -
Vvi4g1290 526 Pfam Glycosyl hydrolase family 9 55 512 IPR001701 GO:0004553|GO:0005975
Vvi4g1290 526 SUPERFAMILY Six-hairpin glycosidases 53 517 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1290 Vvi-Chr4 19803723 19806398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1290 4 525 Glycoside Hydrolase AT1G75680 64.068 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1290 - K01179 vvi:100267758 1026.54