LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi4g1281	ATGGCGTCCGAAAAAGAGACGGCTGGGTCCGGATCTGCCGCGGCAATCAACGGCGGCGAAGCCCTAGAACCACCGAAGCGGAAGATAGCTCTGATCACCGGCATAACGGGGCAGGATGGGTCGTATCTAACGGAGTTTCTCCTGAACAAGGGGTACGAAGTCCACGGTCTGATCCGACGATCTTCCAATTTCAATACCCAACGCCTCAATCACATCTACATCGATCCTCACAACTCCCATAAAGCTCGAATGAAGCTCCACTACGCCGACCTCTCCGACGCCTCCTCCCTACGCCGCTGGATCGACACCATCGCCCCCGACGAGGTCTACAACCTTGCTGCCCAGTCCCACGTCGCCGTTTCCTTCGAGATCCCGGATTACACCGCCGATGTGGTGGCCACGGGCGCCCTCCGCCTCCTCGAAGCCGTCCGATCCCACATCATGGCCACCGGCCGATCTCACATTCGGTACTACCAAGCCGGATCCTCGGAGATGTTCGGATCCACTTCGCCTCCCCAATCGGAAACCTCTCCATTTCACCCCCGATCCCCTTACGCGGCCTCTAAATGTGCCGCTCATTGGTACACCGTGAACTACCGAGAAGCCTACGGGCTCTTCGCCTGCAATGGGATTCTGTTCAATCACGAATCCCCACGGCGGGGTGAGAATTTCGTGACGCGGAAGATTACACGAGCCGTGGGGAGGATCAAGATTGGGTTGCAGAGCAAACTGTTCATGGGGAATTTGCAGGCTTCGAGAGATTGGGGTTTCGCGGGGGATTATGTGGAAGCGATGTGGATGATGCTGCAGCAGGAGAAGCCGGACGATTACGTGGTGGCGACGGAGGAGTCACACACGGTGGAGGAGTTCTTGGAGGTGGCATTTGGGTCTGTGGGGTTGAATTGGAGAGATCATGTGGTGATTGATAAGAGGTACTTTAGACCTGCTGAGGTTGATAACCTTAAGGGTGATTCTAGCAAAGCAAGGAAGGTGCTTGGTTGGAAGCCTAAGGTGGATTTTGAGCAGTTGGTGAAGATGATGGTTGATGAGGATATTGAATTGGCTAAGAGGGAGAAGGTGCTTGTGGACGCGGGCTATATGGACGCACAGCAGCAGCCTTGA	1122	0.5553	MASEKETAGSGSAAAINGGEALEPPKRKIALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRLNHIYIDPHNSHKARMKLHYADLSDASSLRRWIDTIAPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIMATGRSHIRYYQAGSSEMFGSTSPPQSETSPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFMGNLQASRDWGFAGDYVEAMWMMLQQEKPDDYVVATEESHTVEEFLEVAFGSVGLNWRDHVVIDKRYFRPAEVDNLKGDSSKARKVLGWKPKVDFEQLVKMMVDEDIELAKREKVLVDAGYMDAQQQP*	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi4g1281	373	Hamap	GDP-mannose 4,6-dehydratase [gmd].	28	357	IPR006368	GO:0008446\|GO:0019673
	Vvi4g1281	373	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	28	353	IPR036291	-
	Vvi4g1281	373	Gene3D	-	221	347	-	-
	Vvi4g1281	373	FunFam	GDP-mannose 4,6-dehydratase	31	229	-	-
	Vvi4g1281	373	PANTHER	GDP-MANNOSE 4,6-DEHYDRATASE	25	363	IPR006368	GO:0008446\|GO:0019673
	Vvi4g1281	373	Pfam	GDP-mannose 4,6 dehydratase	31	347	IPR016040	-
	Vvi4g1281	373	NCBIfam	GDP-mannose 4,6-dehydratase	28	354	IPR006368	GO:0008446\|GO:0019673
	Vvi4g1281	373	CDD	GDP_MD_SDR_e	30	353	-	-
	Vvi4g1281	373	Gene3D	-	31	337	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi4g1281	31	348	Miscellaneous Gene Families	AT3G23820	23.460	1.05e-06	48.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi4g1281	K01711		-	vvi:100264358	747.658