Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1277 ATGGCACGTACGAAGCAAACCGCTCGCAAATCCACAGGAGGAAAGGCTCCAAGAAAGCAGCTTGCCACAAAGGCTGCCAGGAAGTCAGCTCCCACCACTGGTGGAGTCAAGAAGCCCCACCGATACCGTCCAGGAACTGTCGCACTTCGTGAAATTCGGAAGTATCAGAAAAGCACTGAGCTCTTGATCCGCAAGCTGCCCTTCCAACGACTTGTCCGTGAAATTGCACAGGACTTCAAGACGGATTTGAGGTTCCAGAGCCATGCAGTTCTTGCACTTCAGGAGGCGGCTGAGGCTTACCTTGTTGGTCTATTTGAGGATACCAACCTCTGTGCCATCCATGCCAAGAGGGTGACTATCATGCCCAAGGATATCCAGCTTGCCAGGCGAATTCGTGGTGAAAGGGCCTAG 411 0.5304 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1277 136 SUPERFAMILY Histone-fold 2 133 IPR009072 GO:0046982
Vvi4g1277 136 MobiDBLite consensus disorder prediction 1 43 - -
Vvi4g1277 136 ProSitePatterns Histone H3 signature 1. 15 21 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi4g1277 136 Pfam Core histone H2A/H2B/H3/H4 1 132 IPR007125 GO:0003677
Vvi4g1277 136 ProSitePatterns Histone H3 signature 2. 67 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi4g1277 136 Gene3D Histone, subunit A 2 136 IPR009072 GO:0046982
Vvi4g1277 136 SMART h35 34 136 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi4g1277 136 FunFam Histone H3 2 50 - -
Vvi4g1277 136 PANTHER HISTONE H3 1 134 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi4g1277 136 FunFam Histone H3.3 53 136 - -
Vvi4g1277 136 PRINTS Histone H3 signature 114 135 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi4g1277 136 PRINTS Histone H3 signature 98 114 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi4g1277 136 PRINTS Histone H3 signature 80 98 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi4g1277 136 PRINTS Histone H3 signature 3 17 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi4g1277 136 PRINTS Histone H3 signature 17 31 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi4g1277 136 PRINTS Histone H3 signature 34 55 IPR000164 GO:0000786|GO:0003677|GO:0030527
Vvi4g1277 136 PRINTS Histone H3 signature 58 75 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1277 Vvi-Chr4 19688850 19690430 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1277 K11253 - sspl:121769269 266.159