Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1270 ATGGGGTCTGCTGGTGGTGAGGAGGTTATGCGAGGACCGAGCGGCCGTGGAGAGAGGGTTGTTGTGTCAGTTCGGCTGCGACCTTTGAATGAGAAGGAGATTTCAAGGAATGATGCATTGGACTGGGAATGCATCAATGACACCACTATAATATTCAAGAACCACCTTCCTATTCCAGAGAGATCAATGTACCCAAGTGCCTATACATTTGACAGAGTATTTAGGTCTGATTCCACTACGAGGGAGGTATATGAGGCAGGAGCCAAGGAAGTTGCTCTTTCGGTTGTCAGTGGTATTAATTCAAGTATTTTTGCTTATGGACAAACAAGCAGTGGAAAGACATTCACTATGAGCGGAATTACTGAGTATACCATGGCAGATATATATGACCATATAGAGAGGCACAAGGAAAGAGAATTTCTTTTGAAGTTCTCTGCTATGGAGATTTACAATGAATCTGTCAGAGACCTTCTCAGCTCAGATACTGCTCCGCTTCGACTTCTGGATGATCCAGAGAGAGGAACTATTGTTGAGAAACTCACTGAGGAAACTCTGAGAGACTGGAACCATCTAATAGAGCTCCTTTCCCTATGCGAAGCCCAGAGACAAATAGGGGAGACCGCACTTAATGAAACAAGCTCTAGATCTCATCAAATTCTCAGACTGACAGTTGAAAGTTCTGCTCGTGAGTTTTTAGGCAATGACAATTCAAGTGTTCTTACATCTACTGTGAATTTTGTTGATCTTGCTGGAAGTGAGCGTGCATCTCAGTCATTATCAGCTGGCACAAGGCTGAAAGAAGGTTGCCACATAAACCGCAGTTTATTAACCCTGGGAACTGTTATCCGTAAGCTAAGCAAAGGAAGAAGTGGACATATTCCTTATAGAGATTCAAAATTAACCCGCATATTGCAGTCCTCCTTAGGAGGCAATGCCAAAACTGCTATCATATGTACTATGAGTCCTGCAAGAAGCCATGTTGAGCAATCAAGAAACACCCTCTTGTTTGCGAGTTGTGCTAAGGAAGTGACTACCAATGCACAGGTTAACGTAGTCATGTCTGATAAAGCATTAGTGAAACACCTGCAGAGAGAATTGGCTAGACTGGAGAATTCATTGAGAAGTCCAGAACCAACTTCTATCTGTCTTGATACTGCCACATTACTGAGAGATAAAGACCTTCAGATTGAAAAGTTGGAGAAAGAGTTAAGAGAGCTGACTCTGCAACGAGATCTTGCTCAATCTCAAGTTGAGGATTTACTGGGAGTCGTTGGAGATGATAGACTTCCAATGATATGGGCAGATATGGATGATCACTACCCAAAATTAAGAGTGAGGAGATCATGGGAATCTGAAAATCCAACATCAGAGACATTTGCTTTGGCAGATGATCAAACACCAGCTTCTGGTCTCAGAACATTTGCTTTGGCAGATGATCAAACACCAGATGTTGGTCTCAGAACATGTGATACATCTCAGTACTCTGATGGAAACAGTGTGGATGATTCTGACGACCACTATCCACCACTTCCTGAATCTGAAGATAATTTTCTTCACAATGGTACATCTGCACTGGTGTCAGTTAATACCCCTAATCATGTTGCAATTGATCTGAGCTCACAGTGGGACAAGATTGAAGAACAGAGTAATGCAAACTCGGAGGATCTTTGCAAGGAAGTCAGATGTATTGAGATAGAGCATTCAATCATGAAAAGAGATATAGAATCTAATACATTGTCACCTGTAAGAGACACAGATGCCTTAGAATTGAAGGTGGTAAGGAATGGAGATGGAGCAAACCAGGAATTTACTTCACCCCTGTTGAAGGAGGATAAAGAGTTGAATTGCAACCAGCGTACTGTGGTCATTCCTTCTCCCCAAGAATTCTCACCATGGCTGCTGGAAAAGGAAAATTCTAGTTGTAGAAGCTTGAAGTTAACAAGGAGTAGAAGTTGTAAAGCAAGTTTCATGTATTGCTCGTCTTCACCCTGGTTTGAGAAGGAAGAAAAGGACAAGTACACACCATCCAATGTGTTTGAGAAAGACTTTATAGGAAGACCTGAGGGGTTCCAAAAGAAACTTGCTTCATTAAATTATGATACTGAAATTGACAAGCTATCAAGGAAAGGTGGTCAAACTTTCAGAGGGAGTTCCTCTGTAGATCAACTCAAAGAACAAGTTGTCACAACTTCAACTGATGAGGATGTTACCAGCCTCAACACTTATGTTGCAGGACTAAAGGAAATGGCCAAGTTTCAGTATGAGGAACGACTTGCTGATGATCAGGAGTCAGAACCAGAAGCCAACAAATCTGTAAAGAATGTAAAAGATGTTGGTTTGGATCCAATACAAGATGATTTGGCAAGTCCTTCAAGATGGCCTTTCGAATTCAAGAGACTCCAAAAAGAGATTATTGAACTCTGGCATTCTTGCAATGTGTCCTTGGTTCATAGAACGTACTTCTTCCTACTGTTTCAAGGGGATCCAGCAGATTCCATTTACATGGAGGTAGAGCTTAGAAGGCTATCCTTCCTCAAGGACACATTCTCTCGGGGTAATCAGACTGTAGTTGATGGTCACGCTCTCACCCCCGCCTCAAGCGTGAGAGCACTTCGTCGTGAGAGGGAGATGCTGTGTAAGCAAATGCAGAAAAAGCTATCAGAAGATGAGAGAATGAGCCTCTTCCTTAAGTGGGGTGTCCAGCTGAATGCAAAGAATAGGAGACTACAGTTAGCCTACCGCTTGTGGACTGACACAGAGGACATGAACCACATTTCAGAGAGTGCCAATATTGTTGCAAGGTTGACGCGGTTTGTACAGCCAGAGGAGGCCTTCAAGGAGATGTTTGGGCTCAACTTCACGCCCAGGCGCATGAGTAGGAGATCCCATAGTTGGAAACTTAACATTAAGCCATTCTTGTAA 2922 0.4281 MGSAGGEEVMRGPSGRGERVVVSVRLRPLNEKEISRNDALDWECINDTTIIFKNHLPIPERSMYPSAYTFDRVFRSDSTTREVYEAGAKEVALSVVSGINSSIFAYGQTSSGKTFTMSGITEYTMADIYDHIERHKEREFLLKFSAMEIYNESVRDLLSSDTAPLRLLDDPERGTIVEKLTEETLRDWNHLIELLSLCEAQRQIGETALNETSSRSHQILRLTVESSAREFLGNDNSSVLTSTVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRSGHIPYRDSKLTRILQSSLGGNAKTAIICTMSPARSHVEQSRNTLLFASCAKEVTTNAQVNVVMSDKALVKHLQRELARLENSLRSPEPTSICLDTATLLRDKDLQIEKLEKELRELTLQRDLAQSQVEDLLGVVGDDRLPMIWADMDDHYPKLRVRRSWESENPTSETFALADDQTPASGLRTFALADDQTPDVGLRTCDTSQYSDGNSVDDSDDHYPPLPESEDNFLHNGTSALVSVNTPNHVAIDLSSQWDKIEEQSNANSEDLCKEVRCIEIEHSIMKRDIESNTLSPVRDTDALELKVVRNGDGANQEFTSPLLKEDKELNCNQRTVVIPSPQEFSPWLLEKENSSCRSLKLTRSRSCKASFMYCSSSPWFEKEEKDKYTPSNVFEKDFIGRPEGFQKKLASLNYDTEIDKLSRKGGQTFRGSSSVDQLKEQVVTTSTDEDVTSLNTYVAGLKEMAKFQYEERLADDQESEPEANKSVKNVKDVGLDPIQDDLASPSRWPFEFKRLQKEIIELWHSCNVSLVHRTYFFLLFQGDPADSIYMEVELRRLSFLKDTFSRGNQTVVDGHALTPASSVRALRREREMLCKQMQKKLSEDERMSLFLKWGVQLNAKNRRLQLAYRLWTDTEDMNHISESANIVARLTRFVQPEEAFKEMFGLNFTPRRMSRRSHSWKLNIKPFL* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1270 973 MobiDBLite consensus disorder prediction 492 511 - -
Vvi4g1270 973 PANTHER CENTROMERE PROTEIN E 18 962 IPR027640 GO:0003777|GO:0007018
Vvi4g1270 973 ProSitePatterns Kinesin motor domain signature. 242 253 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vvi4g1270 973 CDD KISc_CENP_E 20 343 - -
Vvi4g1270 973 Gene3D Kinesin motor domain 14 374 IPR036961 -
Vvi4g1270 973 SMART kinesin_4 17 351 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1270 973 Coils Coil 868 888 - -
Vvi4g1270 973 Coils Coil 389 416 - -
Vvi4g1270 973 FunFam Kinesin-like protein 13 374 - -
Vvi4g1270 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 374 IPR027417 -
Vvi4g1270 973 Pfam Domain of unknown function (DUF3490) 796 956 IPR021881 -
Vvi4g1270 973 PRINTS Kinesin heavy chain signature 293 314 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1270 973 PRINTS Kinesin heavy chain signature 207 224 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1270 973 PRINTS Kinesin heavy chain signature 98 119 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1270 973 PRINTS Kinesin heavy chain signature 243 261 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1270 973 Pfam Kinesin motor domain 25 343 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi4g1270 973 Coils Coil 352 372 - -
Vvi4g1270 973 ProSiteProfiles Kinesin motor domain profile. 19 343 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1270 Vvi-Chr4 19638019 19645915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1270 18 402 Miscellaneous Gene Families AT5G06670 42.065 6.30e-84 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1270 K11498 - vvi:100854194 1898.25