Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1265 ATGGCATCTGCCTCTCTTCTCAAGTCATCTCCGGTTCTCGACAAGTCGGAGTGGGTGAAGGGCCAGTCACTTCGCCAACCCTCCGTTTCCGTGGTCCGCTGCAACCCTGTTGCTCCCTCAGTGCTAACCATTCGAGCTGGCTCATACGCTGATGAGCTTGTCAAAACCGCGAAAACTATTGCCTCTCCTGGGCGTGGAATCTTGGCGATGGATGAGTCAAATGCTACCTGCGGGAAGCGTCTGGCATCAATTGGGCTAGAGAACACGGAGGCCAACCGCCAGGCTTACAGAACACTCCTGGTCACGGCACCTGGGCTTGGCAACTACATCTCAGGAGCTATCCTCTTCGAGGAGACACTCTACCAATCCACCACTGACGGGAAGAAGATGGTTGATGTGCTTGTTGAGCAGAAAATTGTGCCTGGTATTAAGGTTGACAAGGGTTTAGTTCCTCTGGTCGGTTCAAACGACGAGTCTTGGTGCCAGGGTCTAGATGGCCTCGCCTCCCGCTCTGCTGCTTACTATCAGCAGGGTGCTCGTTTCGCAAAATGGCGCACGGTTGTGAGCATTCCCAACGGCCCATCTGCCCTTGCTGTGAAGGAAGCAGCCTGGGGTCTGGCTCGCTATGCTGCCATCTCTCAGGACAATGGATTGGTGCCAATCGTGGAGCCGGAGATTCTGCTTGATGGGGAACATGGGATCGACAGGACCTTTGAAGTGGCCCAGAAGGTATGGGCTGAGGTTTTCTTCTACCTTGCTGAGAACAATGTCATGTTTGAAGGTATCCTTCTCAAGCCCAGCATGGTTACTCCTGGGGCCGAGTGCAAGGACAAAGCCACACCTGAACAGGTTGCCCAATACACCCTCAAGCTCCTCAGCCGAAGAATCCCCCCAGCTGTCCCTGGAATCATGTTTTTATCTGGTGGGCAATCTGAGGTGGAAGCTACCCTCAACCTGAATGCAATGAACCAAGCTCCTAACCCATGGCACGTGTCCTTCTCATACGCAAGAGCCCTTCAGAACACTTGCTTGAAGACGTGGGGAGGAAGGCCTGAGAACGTGAAGGAGGCTCAAGATACTCTTCTTCTCAGGGCAAAGGCCAACTCTCTTGCTCAGCTTGGCAAGTATACCGGTGAGGGAGAGTCTGAGGAGTCCAAGCAAGGAATGTTCGTGAAGGGTTATGTCTACTAA 1191 0.5348 MASASLLKSSPVLDKSEWVKGQSLRQPSVSVVRCNPVAPSVLTIRAGSYADELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTAPGLGNYISGAILFEETLYQSTTDGKKMVDVLVEQKIVPGIKVDKGLVPLVGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQDNGLVPIVEPEILLDGEHGIDRTFEVAQKVWAEVFFYLAENNVMFEGILLKPSMVTPGAECKDKATPEQVAQYTLKLLSRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGRPENVKEAQDTLLLRAKANSLAQLGKYTGEGESEESKQGMFVKGYVY* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1265 396 PANTHER FRUCTOSE-BISPHOSPHATE ALDOLASE 47 396 IPR000741 GO:0004332|GO:0006096
Vvi4g1265 396 SUPERFAMILY Aldolase 43 396 - -
Vvi4g1265 396 NCBIfam fructose-bisphosphate aldolase class I 52 372 - -
Vvi4g1265 396 Gene3D Aldolase class I 35 395 IPR013785 -
Vvi4g1265 396 CDD FBP_aldolase_I_a 50 376 - -
Vvi4g1265 396 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 257 267 IPR029768 -
Vvi4g1265 396 FunFam Fructose-bisphosphate aldolase 34 395 - -
Vvi4g1265 396 Pfam Fructose-bisphosphate aldolase class-I 52 396 IPR000741 GO:0004332|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1265 Vvi-Chr4 19605101 19606877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1265 49 396 Miscellaneous Gene Families AT3G52930 55.114 1.11e-132 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1265 K01623 - vvi:100852851 785.023