Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi4g1261 | ATGGCGGTGATCTCGTGCTCTGTGACCGCCGGCTGCCCTAAGGCATACCATGCGGCTTGTATTAAGCGGGACGAGTCATTCTTTCGATCAAGGGCGAAATGGAATTGTGGTTGGCATATATGTAGCAACTGTGAGAAGGCTGCCTACTATATGTGCTATACTTGTACATATTCCTTGTGCAAGGGATGCATTAAAGATGCTGATATATTGTGTGTAAGAGGGAACAAGGGATTTTGCACGACATGCATGAGAACTGTTTTGCTGGTCGAAGATAATGAGCGAGGGAACAAGGAAATGGCTCAAGTAGATTTTGATGACAAAAGTAGCTGGGAGTATCTTTTCAAGGTGTACTGGATTTACTTGAAAGGGAAGCTATCTTTGACTTTAGAGGAGCTCACTCGGGCTAAAAATCCCTGGAAGGGAGCTGGTCTTATGGCTCGTAAAGGGGAATCTTCAGATGAACTTTATGATGCTAATGATGACAAGGGTTCTAGTTCAGACAGCTCTTCCGGACATCAGGAAGCAAATACTTCTAAAAGAAGGAAAACCAAGAAACAGCCAAAGTTCCTCAACAAGGACAACTCTCTAAATGTGGGAAGATCAGATGATTCCAAGAGGACATGTTTGCCTGAAGGCACAGAATGGGCATCAAAAGAGCTCTTGGAGTTGGTTGGGCACATGAAAAATGGTGATACATCTGTTCTATCTCAGTTTGATGTCCAGGCTCTTTTGCTGGAGTACATAAAGAGAAACAACCTTCGTGATCCTCGCCGGAAAAGTCAAATCATTTGTGACATGAGGCTTAGAAACCTATTTGGGAAAGCACGTGTGGGTCATTTTGAAATGCTAAAGCTTCTCGAATCTCATTTTCTTATAAAAGAGCATTCTCGGGCAGATGATATCATGCGGGGGGGTGTTGTTGATACTCTAGCTAGCCAGGTTGATGCTGATGAAAACAATGACTACCAACTAATGATAATTAAAGATAAGAAACGTAAAACACGTAAAAAGGGTGATGAGAGAGGACCACAGACTAATCTAGATGAATATGCAGCCATTGATGTTCACAACATTAACTTGATTTACTTGCGGCGTATTTTGATGGAAAATCTAATTGAAGATGTTGAGACATTTCAAGCCAAGGTTGTTGGTTCAATTGTACGAATAAGAATTTCTGGTAGCGATCAAAAGCAAGATATGTATAGGCTTGTCCAAGTTGTAGGTACAAGCAAGGTGGATGTACCATACAAAATTGGAAAAAGGACAGCAGATGTCATGCTTGAGATATTAAATTTGAACAAGAAAGAGGTCATATCAATTGATTCAATTTCAAACCAGGAGTTCTCTGAGGATGAATGCAGACGCTTGCGCCAGAGCATAAAGTGTGGACTTGTTAACCGGTTGACTGTTGGTGAGATTCAGGAGAAAGCAATGGCACTTCAGGCAGTTAGAGTGAATGATTGGCTTGAAACGGAGATATTGCGGCTTAATCATCTACGTGATCGAGCGAGTGAAAAGGGGCACAGAAAGGAGCTTAGAGAATGTGTAGAGAAATTACAGCTTCTGAACACACCTGAGGAACGTCAGCGAAGGTTTCGTGAAACTCCAGAAGTACATGCTGATCCAAATATGGATCCAAGTTATATGTCTGATGAAGATGCTGGAGAATCAGACGATAAGAAACAAGATGTTATACCTAGATTTTCTGGCCTTAGTAAAAAGGGAAGAGAGCCATTCTCTCCAAGAAGAGGAGGTGATATTCCAAATGATATGGGGAGCAGGGCACTTAAAAATTTGGTCACCACTAATGAAAGAGGCAGAAACAAGTGTACAACATTTCTCCCTGAGAAAGAAGAAGGTGCTGCTAAGGCTCATGAGAGAGAGAAAGAATCCTCACAGAATCAGGGAGGAGATGCATATGGGTCCAACTGTTGGGAGAAACCAAGAAACCAGGTTGATCCTATTGGTTCAGTAACTGGTGGTTGTACTAATCAAGCTGTGGTGAGATCTGGATTGTCTTCTGGGGTTGCATCAGAAACTTCCACCACCACTCTTTCTACAGGGACAGTACTATCTGCTAATAATGAGAATGACAAAATATGGCACTACCAGGATCCAGCAGGGAAAATTCAAGGACCATTTGGCATGGTGCAGCTGCGGAAGTGGAGTGCAAATGGATTCTTCCCACCTCATCTGAGAATATGGAGGATGAATGAAAAGCAAGATGACTCTATACTTTTGACTGATGCAATGAATCTGCAGTACCATAAAGAGCCACCTCTGCAGAATAACAGCCTTTTACAGTCTCAGCAAGTTAGAGTTGTCTCAAAGGATAGAGAAAATAACTGGGATGGTGGGTTGAATGGTAGTATGAATGCTACTTGGATAGGGAATAAACTAAATGAGGGGCCTGGTAATTCAAATGATGCAACCATTTCTAATGGTAACAATGAACTTGTGAAGAGAGATGGGTGGGGTTCCTGTTCTTCTAGTTGGAGTACACCTGCAGATATCATGAATTCCAAGGAGGTAGAAATTGGAAGTTTTTCTCAGGGTTGGGACTCATTGAAAGGCAACAGTTCTTGGTCTGATCAGCCCCAGGTCTATAGTTCACTTTCCTCGTCCACATTGTCTGGGAAGTCATTTGGAACTGGGTTGCATCAAGGAAGAGAAGGTCATGGTGTTGAAAGATGGGACCCTGGTCAGAATCATGGAAACTTGAATTCACACAGAACAGCAGTTGTTCAAGTTAACAGTGGACATTCAGGTCAATCTCCCAAAGAAAACTGCAGACCTCTGTCCATAATCAGTTCTTCGAGTGGCTGGGATTCCAACTTTGATGTTGTATCTGTGGCTAAATTATCTAAAACATTGGAGCAGGATCATGACATAAACTTCCCAAATCTACCCAGTCCCACACCAAAGCCAAGTGATGGGGACTGGAAAGGTCAGGCTGCTGAAAGCAAACAGTCCGTATCATCAGATGTTCCTGTTCAAGATTCAGGTCCTAGCTGGAGCACTGCTTCCAGTCTAGTGGGCGGTGGCACAAAACTTCCTGAAGTAGCTAGTGATTGGGGAGGATATTCTTCCCCTACTCCAATGAAACCATCTGTTGAGGAATGGGACTCCACTCTAGCATCTGTTTCTTCACTGAAACCGACTGAAGTAGCCTCTGATCATGCTGCTACTCCTACTTCAGAAAGTGTCCAGCTGACTCATTCTTCTCCACCCTATCCAACACCTAATGCATCTAGTTGGCAGCCAATTGATACTGGGCCCACTGAGATTAGCTCTGTAACTGAGGCATCGGTTTCAGATCTCTTGGCTGAAGTTGAAGCAATGGAGTCCCTTGATGGCCTGCCTTCCCCTACTTCAGTTATGAAATGCAGTGGGGAATTGACCCAGGGTTCTAAAAATGATTGTTTTAATTCTGTTGAGGGATTGAGCCCAACACCTGATCCAGCGAAAAATGATGCTTTGAGCTCCACTGGCGATTTCCAATTAACTTCTCAATCGACTATGAGTGCTGAACCTTGTGGGGCATCTCATACTGATGTTCTTGATCCTGATAAGAAGTCTGTGGGGCATTCCTCTTCTAATGATAAGGTGGAGGTGGAAAAGAAGCCCAGTGATGGTTCTGTCAACCAATGGGAGGCAGGTTCAGATATCCAGCCTCCTGCACCATCCACTGACGTTCCAGTTAACCAATGGGAAGCTGGTTCAGATGTCCAGCCTCCTGCGCCATCCATGGCAAGTTGGAACGTGGCTGCCACGGATAATGATGGGAGAGCAGTGTCAGAAACTACAGATACTGGTTGGAGAGCAGTGCAGGGGAATTCAAATTTGGAGTGGGGAGGACCAACTCAAGGGAATATAGAAGTGGGTTGGGAAAGCAGTCAGGGAATGGCACAAGGAAATGCAAACGTGAATTGGGGCACTTCCACTGGGAACCTCGCTGTGTGGGGAGGACAATCTAAATACAGTGGGGGGAGATTTTCTGGTCCCAGAGACCGGGTTTTTCAGGTTGGGGATTCAGGTTTTGATAGGGGTAGAACTTCATTGAACAGGCAGTCAACATTTGGTGGAGCCGGAGGTGGAGGATTTTCTTCCAGGAATCCTCCCAAAGGGCAGCGAGTCTGTAAATTTTTCGAGAGCGGGCACTGCAAGAAGGGAGCATCATGTGATTATCTGCATCCATGA | 4200 | 0.4431 | MAVISCSVTAGCPKAYHAACIKRDESFFRSRAKWNCGWHICSNCEKAAYYMCYTCTYSLCKGCIKDADILCVRGNKGFCTTCMRTVLLVEDNERGNKEMAQVDFDDKSSWEYLFKVYWIYLKGKLSLTLEELTRAKNPWKGAGLMARKGESSDELYDANDDKGSSSDSSSGHQEANTSKRRKTKKQPKFLNKDNSLNVGRSDDSKRTCLPEGTEWASKELLELVGHMKNGDTSVLSQFDVQALLLEYIKRNNLRDPRRKSQIICDMRLRNLFGKARVGHFEMLKLLESHFLIKEHSRADDIMRGGVVDTLASQVDADENNDYQLMIIKDKKRKTRKKGDERGPQTNLDEYAAIDVHNINLIYLRRILMENLIEDVETFQAKVVGSIVRIRISGSDQKQDMYRLVQVVGTSKVDVPYKIGKRTADVMLEILNLNKKEVISIDSISNQEFSEDECRRLRQSIKCGLVNRLTVGEIQEKAMALQAVRVNDWLETEILRLNHLRDRASEKGHRKELRECVEKLQLLNTPEERQRRFRETPEVHADPNMDPSYMSDEDAGESDDKKQDVIPRFSGLSKKGREPFSPRRGGDIPNDMGSRALKNLVTTNERGRNKCTTFLPEKEEGAAKAHEREKESSQNQGGDAYGSNCWEKPRNQVDPIGSVTGGCTNQAVVRSGLSSGVASETSTTTLSTGTVLSANNENDKIWHYQDPAGKIQGPFGMVQLRKWSANGFFPPHLRIWRMNEKQDDSILLTDAMNLQYHKEPPLQNNSLLQSQQVRVVSKDRENNWDGGLNGSMNATWIGNKLNEGPGNSNDATISNGNNELVKRDGWGSCSSSWSTPADIMNSKEVEIGSFSQGWDSLKGNSSWSDQPQVYSSLSSSTLSGKSFGTGLHQGREGHGVERWDPGQNHGNLNSHRTAVVQVNSGHSGQSPKENCRPLSIISSSSGWDSNFDVVSVAKLSKTLEQDHDINFPNLPSPTPKPSDGDWKGQAAESKQSVSSDVPVQDSGPSWSTASSLVGGGTKLPEVASDWGGYSSPTPMKPSVEEWDSTLASVSSLKPTEVASDHAATPTSESVQLTHSSPPYPTPNASSWQPIDTGPTEISSVTEASVSDLLAEVEAMESLDGLPSPTSVMKCSGELTQGSKNDCFNSVEGLSPTPDPAKNDALSSTGDFQLTSQSTMSAEPCGASHTDVLDPDKKSVGHSSSNDKVEVEKKPSDGSVNQWEAGSDIQPPAPSTDVPVNQWEAGSDVQPPAPSMASWNVAATDNDGRAVSETTDTGWRAVQGNSNLEWGGPTQGNIEVGWESSQGMAQGNANVNWGTSTGNLAVWGGQSKYSGGRFSGPRDRVFQVGDSGFDRGRTSLNRQSTFGGAGGGGFSSRNPPKGQRVCKFFESGHCKKGASCDYLHP* | 1400 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 618 | 633 | - | - | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 526 | 593 | - | - | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 1184 | 1211 | - | - | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 150 | 209 | - | - | |
| Vvi4g1261 | 1399 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED | 10 | 1399 | - | - | |
| Vvi4g1261 | 1399 | Gene3D | - | 700 | 757 | IPR035445 | - | |
| Vvi4g1261 | 1399 | FunFam | Zinc finger CCCH domain-containing protein 19 | 2 | 84 | - | - | |
| Vvi4g1261 | 1399 | SUPERFAMILY | SWIB/MDM2 domain | 214 | 291 | IPR036885 | - | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 526 | 540 | - | - | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 553 | 567 | - | - | |
| Vvi4g1261 | 1399 | SUPERFAMILY | Plus3-like | 353 | 482 | IPR036128 | GO:0003677 | |
| Vvi4g1261 | 1399 | CDD | SWIB-MDM2_like | 215 | 290 | - | - | |
| Vvi4g1261 | 1399 | ProSiteProfiles | SWIB/MDM2 domain profile. | 209 | 292 | IPR003121 | - | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 1049 | 1094 | - | - | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 618 | 645 | - | - | |
| Vvi4g1261 | 1399 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 83 | IPR013083 | - | |
| Vvi4g1261 | 1399 | ProSiteProfiles | Plus3 domain profile. | 352 | 485 | IPR004343 | GO:0003677 | |
| Vvi4g1261 | 1399 | ProSiteProfiles | GYF domain profile. | 698 | 752 | IPR003169 | GO:0005515 | |
| Vvi4g1261 | 1399 | Gene3D | - | 353 | 482 | IPR036128 | GO:0003677 | |
| Vvi4g1261 | 1399 | Gene3D | SWIB/MDM2 domain | 203 | 299 | IPR036885 | - | |
| Vvi4g1261 | 1399 | Pfam | GYF domain | 701 | 741 | IPR003169 | GO:0005515 | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 1214 | 1237 | - | - | |
| Vvi4g1261 | 1399 | Pfam | SWIB/MDM2 domain | 217 | 290 | IPR003121 | - | |
| Vvi4g1261 | 1399 | FunFam | Zinc finger CCCH domain-containing protein 19 | 353 | 482 | - | - | |
| Vvi4g1261 | 1399 | CDD | GYF | 698 | 755 | IPR003169 | GO:0005515 | |
| Vvi4g1261 | 1399 | SMART | rtf1 | 352 | 462 | IPR004343 | GO:0003677 | |
| Vvi4g1261 | 1399 | Pfam | Plus-3 domain | 357 | 460 | IPR004343 | GO:0003677 | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 881 | 908 | - | - | |
| Vvi4g1261 | 1399 | SMART | gyf_5 | 699 | 754 | IPR003169 | GO:0005515 | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 1140 | 1247 | - | - | |
| Vvi4g1261 | 1399 | FunFam | Zinc finger CCCH domain-containing protein 19 | 202 | 297 | - | - | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 1155 | 1179 | - | - | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 984 | 1013 | - | - | |
| Vvi4g1261 | 1399 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1374 | 1399 | IPR000571 | GO:0046872 | |
| Vvi4g1261 | 1399 | SUPERFAMILY | GYF domain | 687 | 753 | IPR035445 | - | |
| Vvi4g1261 | 1399 | MobiDBLite | consensus disorder prediction | 962 | 1037 | - | - | |
| Vvi4g1261 | 1399 | SUPERFAMILY | CCCH zinc finger | 1374 | 1398 | IPR036855 | GO:0046872 | |
| Vvi4g1261 | 1399 | SMART | swib_2 | 204 | 295 | IPR019835 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi4g1261 | Vvi-Chr4 | 19524306 | 19544111 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | SWI/SNF-BAF60b | Vvi4g1261 | Plus-3 | 6.5e-21 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi4g1261 | - | - | vvi:100252322 | 2762.64 |