Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1253 ATGAAGATCACCATTTGCAGCAAAACCTTATCCTTCCTCTTCATTCTCTTCCTCACAGCCTTCTTCTCCACGCCAATATCTGAAGCCTGCCATGCCATTGATAAAGCGGCACTACTTGATTTCAAGCACAAGATCACCTCCGACCCTTCAAATCTCTTGAAGTCATGGACATCTACCTCGAATTGCTGCACTACTTGGGAAGGCGTCGCCTGCGACTCCTCTGGCAGAGTCGTCAATGTGTCGCGTCCAGGGCTTATTGCCGGCGATGACTTCATCACTGACACCTCCATGTCCGGAACTCTATCTCCTTCTCTTGGAAACGTGTCCTTCCTTCGGTTTCTTGAACTCAGCAATCTCAAGGAGTTGATGGGTCCTCTGCCACCAGAGCTGGGCAAGTTGTCGCATCTCACCCATCTCTTTCTTGACGCAAACAAGCTCAATGGCTCCATACCCACAACGTTTCGACACCTTGTTCGGCTGCAGAAGCTGTATCTTGATAGCAATTACTTGTCTGGTGTTCTTCCTTCAACTGTCATTGAAACTTTAACATCGCTCTCTGAACTGGGTCTTTCAGGAAATCAGTTTTCGGGTTCGGTTCCGTCTTCGATTGGCAAGTTGGTTTTGCTTACTAAACTTGATGTCCATGGAAACAGGATCTCTGGTAGTATTCCTCCAGGTATCGGCAAGCTGAAGAGTCTCAAGTATCTTGATTTATCTGAAAATGGCATAACTGGGAGTCTTCCATCGTCGCTGGGTGGGCTTTCCGAATTAGTACTACTCTATCTCAACCATAACCAGATCACTGGAAGCATTCCTTCTTCAATTTCCGGACTCAGTTCTTTGCAATTCTGCCGGTTGTCAGAAAATGGGATCACTGGTGGTTTACCGGCGTCAATTGGCAAGCTCTCAAAGATCCAAAGGCTAATCCTAGAGAACAACAAGCTCACCGGAAAACTGCCCACAACCATCGGCCATCTCACCTCTCTTACTGACATATTCTTCTCCAATAACTATTTTAGTGGCAAGATACCTTCAAGTATCGGTAATATACAAAACCTTCAGACGCTTGATTTATCGAAAAACCTACTCTCTGGTGAAATTCCCCGTCAGATTGCTAATTTACGCCAGTTACAGGCCTTAGATTTATCGTTCAATCCGCTCGAACTCGAAAGCATTCCAACCTGGTTTGCGAAAATGAATCTTTTTAAGCTCATGTTAGCTAAAACTGGGATTGCGGGGGAGCTTCCAAGCTGGTTAGCTTCATCACCCATAGGTGTACTTGATTTATCTAGCAATGCATTAACAGGGAAATTGCCTCATTGGATAGGGAACATGACCAACCTTTCGTTCCTCAATTTATCCAACAATGGCCTCCACTCTGCGGTACCAGTTGAATTCAAAAACCTTTCGCTGCTGACGGATCTCGACCTCCACTCAAACAACTTCACTGGACACCTGAAAACGATACTGACGAAAAGCGTTCAATTCGCACTTGGCCGGTTTAACTCCATTGATCTTTCTAGCAATATGTTCATGGGTCCCATTGACCAGAACATTGGAGAGAAGCCTTCAACCGCCTCTATCCAATCCCTGATTTTATCTCACAACCCACTGGGAGGGTCCATACCCAAGTCGTTAGGGAAACTGAGGGAATTGGAGGTAGTGGAGCTCGTGGGTAATGGGCTTTCGGGGACAATACCAGTGGAGCTCAGTGACGCCAAGAAACTGCAAACAATTAAGCTTTCGCAAAACAAGCTGAGTGGGGGCATTCCGTATAAAGTGCTGAATTTGGATGAGCTTCAACAATTCAATGTATCCCAAAACCAGCTGAGTGGGAGGATCCCTCCACACAAAGCCCAATTCCCTCCATCTGCCTTCATGGATAATCCCGGCTTGTGTGGTGCTCCACTCCCACCTTGTAAGCACTCCTAG 1932 0.4643 MKITICSKTLSFLFILFLTAFFSTPISEACHAIDKAALLDFKHKITSDPSNLLKSWTSTSNCCTTWEGVACDSSGRVVNVSRPGLIAGDDFITDTSMSGTLSPSLGNVSFLRFLELSNLKELMGPLPPELGKLSHLTHLFLDANKLNGSIPTTFRHLVRLQKLYLDSNYLSGVLPSTVIETLTSLSELGLSGNQFSGSVPSSIGKLVLLTKLDVHGNRISGSIPPGIGKLKSLKYLDLSENGITGSLPSSLGGLSELVLLYLNHNQITGSIPSSISGLSSLQFCRLSENGITGGLPASIGKLSKIQRLILENNKLTGKLPTTIGHLTSLTDIFFSNNYFSGKIPSSIGNIQNLQTLDLSKNLLSGEIPRQIANLRQLQALDLSFNPLELESIPTWFAKMNLFKLMLAKTGIAGELPSWLASSPIGVLDLSSNALTGKLPHWIGNMTNLSFLNLSNNGLHSAVPVEFKNLSLLTDLDLHSNNFTGHLKTILTKSVQFALGRFNSIDLSSNMFMGPIDQNIGEKPSTASIQSLILSHNPLGGSIPKSLGKLRELEVVELVGNGLSGTIPVELSDAKKLQTIKLSQNKLSGGIPYKVLNLDELQQFNVSQNQLSGRIPPHKAQFPPSAFMDNPGLCGAPLPPCKHS* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1253 643 SMART LRR_sd22_2 350 376 - -
Vvi4g1253 643 SMART LRR_sd22_2 230 253 - -
Vvi4g1253 643 SMART LRR_sd22_2 573 599 - -
Vvi4g1253 643 SMART LRR_sd22_2 157 184 - -
Vvi4g1253 643 SMART LRR_sd22_2 254 280 - -
Vvi4g1253 643 SMART LRR_sd22_2 445 466 - -
Vvi4g1253 643 Gene3D Ribonuclease Inhibitor 200 298 IPR032675 -
Vvi4g1253 643 Gene3D Ribonuclease Inhibitor 32 199 IPR032675 -
Vvi4g1253 643 Pfam Leucine rich repeat 209 267 IPR001611 GO:0005515
Vvi4g1253 643 Pfam Leucine rich repeat 132 170 IPR001611 GO:0005515
Vvi4g1253 643 Pfam Leucine rich repeat 328 387 IPR001611 GO:0005515
Vvi4g1253 643 Pfam Leucine rich repeat 426 482 IPR001611 GO:0005515
Vvi4g1253 643 Gene3D Ribonuclease Inhibitor 373 643 IPR032675 -
Vvi4g1253 643 PRINTS Leucine-rich repeat signature 374 387 - -
Vvi4g1253 643 PRINTS Leucine-rich repeat signature 233 246 - -
Vvi4g1253 643 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 304 371 - -
Vvi4g1253 643 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Vvi4g1253 643 SMART LRR_typ_2 350 373 IPR003591 -
Vvi4g1253 643 SMART LRR_typ_2 302 326 IPR003591 -
Vvi4g1253 643 SMART LRR_typ_2 206 229 IPR003591 -
Vvi4g1253 643 SMART LRR_typ_2 182 205 IPR003591 -
Vvi4g1253 643 SMART LRR_typ_2 133 156 IPR003591 -
Vvi4g1253 643 SMART LRR_typ_2 254 278 IPR003591 -
Vvi4g1253 643 SMART LRR_typ_2 230 253 IPR003591 -
Vvi4g1253 643 SMART LRR_typ_2 374 398 IPR003591 -
Vvi4g1253 643 SMART LRR_typ_2 469 492 IPR003591 -
Vvi4g1253 643 SMART LRR_typ_2 157 180 IPR003591 -
Vvi4g1253 643 SMART LRR_typ_2 597 628 IPR003591 -
Vvi4g1253 643 SMART LRR_typ_2 445 468 IPR003591 -
Vvi4g1253 643 SUPERFAMILY L domain-like 29 282 - -
Vvi4g1253 643 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 372 643 - -
Vvi4g1253 643 SUPERFAMILY L domain-like 201 486 - -
Vvi4g1253 643 FunFam Nuclear pore complex protein NUP107 31 188 - -
Vvi4g1253 643 SUPERFAMILY L domain-like 401 640 - -
Vvi4g1253 643 FunFam Piriformospora indica-insensitive protein 2 199 297 - -
Vvi4g1253 643 Gene3D Ribonuclease Inhibitor 301 372 IPR032675 -
Vvi4g1253 643 PANTHER LEUCINE RICH REPEAT KINASE 2 252 641 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1253 92 640 Receptor kinase-like Gene Family AT5G46330 34.083 2.18e-68 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1253 - - vvi:100259170 1206.82