Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1251 ATGTCATTTTGGAATACATCCTATATTGGCGTTCCTTTCACCAAGAGAGGGTGCACCAACCACTTATCTGCTGAGCCATCAGTGGCATTTATAATAAATAATCAAGATAAGCATGTGGATAAGGAAGAGGTTACCATGCCATGCCCCACCTGCACTCCACCAGAAGGAGGACATGGGGTTGTTTCCTCATGCCTGAACTGTCTCCTTGCGGGTGATATTCTGTACCGTTTTGAGTGTTCAATCAACCCCACTCTCTTTCTTGCAAAAGCACGTGGTGGAACTTGCACTCTCGCAGTCTCAGATCCAAATGAAATTGTGATCCATCGAGTAACCTACCTGCTTAACAATGGCTTTGGGTGTTATAATGTCTTCAAGAACAATTGTGAAGACTTCGCCATCTATTGTAAGACTGGCCTCCTTGTTATTGATCAAGGAACTACAGGACGGAGTGGATAA 456 0.443 MSFWNTSYIGVPFTKRGCTNHLSAEPSVAFIINNQDKHVDKEEVTMPCPTCTPPEGGHGVVSSCLNCLLAGDILYRFECSINPTLFLAKARGGTCTLAVSDPNEIVIHRVTYLLNNGFGCYNVFKNNCEDFAIYCKTGLLVIDQGTTGRSG* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1251 151 Pfam Lecithin retinol acyltransferase 43 140 IPR007053 -
Vvi4g1251 151 Gene3D endopeptidase domain like (from Nostoc punctiforme) 8 148 - -
Vvi4g1251 151 ProSiteProfiles LRAT domain profile. 1 144 IPR007053 -
Vvi4g1251 151 PANTHER OS05G0310600 PROTEIN 42 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1251 Vvi-Chr4 19432324 19432779 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1251 - - vvi:100260806 209.149