Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1250 ATGGGCGCTCCTTGTTTTTCCCTGTCTTCTCTGCTTCTGGTGATTGCAGTTGCAGGTCTGTTCTTTTTAGGAGATTCCAAGACCTACTGGGGAGATATAGAGGTGCTGAAAGAGCTGAGAAAAGGACTCGACCCTGGCTCAGTGATTCCCGGCTCTTGCTTGAGCTCGTGGGACTTCTCAGTTGATCCATGCGACAGCGTTTTCGGCGAGCGCTTCACTTGTGGGTTCAGGTGCGATGTCGTCGTCTCCGGCTCCAGTCGAGTTACTGAAATCAGTCTCGACCAGGCGGGTTACGCCGGGTCGCTCTCTTCTGCCTCCTGGAACCTTCCTTACTTAGAGACTCTGGACCTTTCCGATAATTTCTTTTCTGGGTCGGTTTCTGCCTCTTTGTCAAACTTGACTCGTCTACGGCGACTTGGGCTATCAAGAAACTCCTTCTCCGGCGAGATACCCACTTCCATCGGGTTTATGCACAGCCTGGAAGAGCTATACCTCGACAGCAATGGTTTTGAAGGAGCAGTCCCAGCGAGTTTCAACGGTCTGGTGAACTTGAAAAGGTTGGAGCTTCAAGGTAACAAGCTGTCAGGAGAGTTTCCCGATTTGGGTTCTCTAAAAAACCTTGACTTCCTAGACGCCAGCGGTAACGTCATCTCCGGCAACGTTCCAGACACGTTTCCGACATCACTGGTCGAAATTTCCATGAGAAACAACAGCTTGGAAGGAAACATCCCTCGAGCGATAAAAAATCTAAGCTTTTTACAGGTACTGGATCTGAGCCACAACCGACTCAATGGCTCAGTCCCCTTTTTCGTCTTCGACCACCCCACTCTGCAACAGGTCACCCTCTCCAACAACCACTTCAACTCCATAGAAGTCCCCACGAACCCGGCCACCCAAAGCCAACTCATAGCCCTGGACCTGAGCTACAACGACCTCCGAGGATTGTTGCCATCCTTCTTGGCCTTGATGACAAAGCTCTCAGCTCTCTCCCTAGAGAATAACAAGTTCACAGGAATGATACCCACCCAGTACGCCTTGAAGGCTGTGGTTCCCGACGCCGGAGTGTCCCCATTCGAGAGGCTAATGCTGGGAGGGAACTACCTGTTCGGACCCATTCCATCACCGTTAATGGAGCTGAGACCAGACGGGGCAACAGTGAGGCTTGTGGATAACTGCTTGTACAGGTGTCCGGCAATGTTCTCCTTCTGTCAGGGCGGTGAACAGAAGTCGTTAATGGAGTGTAAGAGGTTTGGACCAGTGATACCTTGA 1269 0.5154 MGAPCFSLSSLLLVIAVAGLFFLGDSKTYWGDIEVLKELRKGLDPGSVIPGSCLSSWDFSVDPCDSVFGERFTCGFRCDVVVSGSSRVTEISLDQAGYAGSLSSASWNLPYLETLDLSDNFFSGSVSASLSNLTRLRRLGLSRNSFSGEIPTSIGFMHSLEELYLDSNGFEGAVPASFNGLVNLKRLELQGNKLSGEFPDLGSLKNLDFLDASGNVISGNVPDTFPTSLVEISMRNNSLEGNIPRAIKNLSFLQVLDLSHNRLNGSVPFFVFDHPTLQQVTLSNNHFNSIEVPTNPATQSQLIALDLSYNDLRGLLPSFLALMTKLSALSLENNKFTGMIPTQYALKAVVPDAGVSPFERLMLGGNYLFGPIPSPLMELRPDGATVRLVDNCLYRCPAMFSFCQGGEQKSLMECKRFGPVIP* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1250 422 SUPERFAMILY L domain-like 74 414 - -
Vvi4g1250 422 ProSiteProfiles Leucine-rich repeat profile. 183 205 IPR001611 GO:0005515
Vvi4g1250 422 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 201 290 - -
Vvi4g1250 422 PRINTS Leucine-rich repeat signature 112 125 - -
Vvi4g1250 422 PRINTS Leucine-rich repeat signature 250 263 - -
Vvi4g1250 422 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 9 414 - -
Vvi4g1250 422 FunFam Nuclear pore complex protein NUP107 31 200 - -
Vvi4g1250 422 SMART LRR_typ_2 323 346 IPR003591 -
Vvi4g1250 422 SMART LRR_typ_2 157 180 IPR003591 -
Vvi4g1250 422 SMART LRR_typ_2 250 274 IPR003591 -
Vvi4g1250 422 SMART LRR_typ_2 109 132 IPR003591 -
Vvi4g1250 422 SMART LRR_typ_2 181 204 IPR003591 -
Vvi4g1250 422 Pfam Leucine Rich Repeat 112 133 IPR001611 GO:0005515
Vvi4g1250 422 Gene3D Ribonuclease Inhibitor 32 199 IPR032675 -
Vvi4g1250 422 Pfam Leucine rich repeat 159 217 IPR001611 GO:0005515
Vvi4g1250 422 Gene3D Ribonuclease Inhibitor 296 405 IPR032675 -
Vvi4g1250 422 Gene3D Ribonuclease Inhibitor 200 295 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1250 Vvi-Chr4 19416893 19418161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1250 50 381 Receptor kinase-like Gene Family AT1G08590 31.657 6.33e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1250 - - vvi:100257361 839.336