Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1249 ATGACAGCTCTTGCTTCAGTCTCGGCATCTGCATGGATCCCCGAGGACGACCTCTTGTTGAAGAACGCCGTCGAGGCGGGGGCTTCTTTGGAAGCACTTGCTAAAGGTGCAGTGCAATTCTCTCGCAGATTTACAGTCCAAGAACTAAAAAACCGATGGCATTCTCTCCTCTATGATCCTGATATTTCAGCTGAAGCTTCTGCATGCATGGTTCAGTTTGAACCTTCAGCATCCAATTATTCGTTCAAATCTAACAGATCGGGTAATTGTAAAGAAAATGTAGAGGTTCTTGGAAAAAGAAAAGTTGAAAGCATTCGTAGAAAGTATCATGCTATGCGGAAGAGGATTCACAATGTGCCAAATGCTGATGGCTATATGTGCAATGGAGGTGGTTGTGAAGAGCATATAGTTCTTGATAATGAGCCTCCTGTTGGCAGTTATGCGCTGGGAGATCGTGTCTTGAGCCATTTTGGTCTTCAAGATAATGTACCCCAAGATATTCCTCATATTATAGGAGATAATTTAGTTGACTTCGGGAATTGCTCAGGCTTTGAGGACAGAGGGCTTCCAGATAGAAACCTATTCAATAACAATGATTTTGAGAGAAAGCCCTTGTCTACTCTTGATTCACTAAATACAAATTTAGGAAATGTTGGCTCTGAATTCGGAGGAGGACAGCATTGTGAATCACCTGTTTCAGATGGTAGTGCTTCACTTCACCAAATGGGGTTTCCATCACCACTTCCTAGGGTGCCTCTGTGGAAAACAATTGAGGACATTTCAGCACCTGTGATGCCAATCAATGTCAACCTGGGAGATAGAACTGTAAGTGCAGAAGAGACATTGACACTTGCTGCTGCTGCTGATGGTAATAAACCATGCTCATCAGGGTATGCTGTCCATTCACAGCCAACATTGAAAGACACATGCGTTGGATTAAATAACTCAACTGCTATCACAGATGGTACATCGATTGTAATACATGGCAGTGCATGTCCTGCTGAATTAGTTGTTAGCGCTGACCCGTTACAATCCAGTCACAGCAATCAGGAAGGTGTTCATTCAGAGGTCACTATGCCATCATCTACATTAATTTCAAATCCTCATTCTTCTGAACTGCAGGAAGGGGTTATGTACTGCACATTGAATACTGAGGACAGTGAAATCCCATACAATGATGATAATTTCTTGCCTGCTACATTTGCTTCCACAACACAGCCAATTTTTGAAGAGGCTTGTGAGCCAGCATTCTCCTCTGACATCCAGAAGGACAGTGAACAAGCACCAAGCTTAATGAATAAAGATAAAAATCCTGCACCATCTTTCAAGGCTCCCCAGATGATAGGAAAAGATAGAATGCCAGAAATTGTTCCAGACCACCAATTTATTGGTTATGGAAACAGATCTGAATTGTCTGGTGACAACTGTTTGGCTACAGCTTCCAGACATTTTAACAGCATTCCTGTAGTCCCAAGTCATCATAGTTCAGCACATGCAACTCCAAACTCTGTCATGGATGGAGCTCCTGGGCGAGGGGTTCTAAATGTCAAATCAAGGGAAAAAGAAGCTCCAGGTACATATGGGGAGCATTTATTTTTACATGCAGGATCAGGTTCCACCAAAATGAATTTTCTGGAACCAATAAACTCCTTAATGTCTGATCAAGAGGAATCTGAAAGTGATGATGATGTGCCCTACTTTTCTGACATCGAAGCAATGATACTTGAGATGGACTTGTGTCCAGAAGATCAGGATTCATATATTGGTAGCAAAGTCTCAAGATATCAACATGAGGATGCTAGGAAGGTGATCATAAGGTTAGAACAGTGTGCTCAATCTTCAATGCAAAGAGCTATTGCATCTCAATGTGCACTTGCCATCTTCTATGGCCGCCATTTGAAGCATTATATTAAAAAGGCTGAGGTAATACTTGGTAGAGCAACAAATGAGATTGATGTTGATATTGACTTGTCAAAGGAAGGGCGTGCTAATAAAATATCTAGACGGCAGGCTATCATAAGGATGCAAGGGGATGGATCTTTCTTATTGAAGAATCTTGGGAAGAATGTAATTTTATTGAATGGCCAAGAAGTTGCTACTGGACAGGTTGGGGGTCTTAGTTCAAGTAGTTTGATAGAGATAAGGGGAATGAGATTTGTGTTTGAAGTGAATCAAAAATCTGTGAGGCGGTATCTGGCAAATGTTGCCAAAAAAGGCCAAGTAAAGAGCACCAATTTTGAATGGTCCCCTAATGGGGTTCCATGA 2265 0.4185 MTALASVSASAWIPEDDLLLKNAVEAGASLEALAKGAVQFSRRFTVQELKNRWHSLLYDPDISAEASACMVQFEPSASNYSFKSNRSGNCKENVEVLGKRKVESIRRKYHAMRKRIHNVPNADGYMCNGGGCEEHIVLDNEPPVGSYALGDRVLSHFGLQDNVPQDIPHIIGDNLVDFGNCSGFEDRGLPDRNLFNNNDFERKPLSTLDSLNTNLGNVGSEFGGGQHCESPVSDGSASLHQMGFPSPLPRVPLWKTIEDISAPVMPINVNLGDRTVSAEETLTLAAAADGNKPCSSGYAVHSQPTLKDTCVGLNNSTAITDGTSIVIHGSACPAELVVSADPLQSSHSNQEGVHSEVTMPSSTLISNPHSSELQEGVMYCTLNTEDSEIPYNDDNFLPATFASTTQPIFEEACEPAFSSDIQKDSEQAPSLMNKDKNPAPSFKAPQMIGKDRMPEIVPDHQFIGYGNRSELSGDNCLATASRHFNSIPVVPSHHSSAHATPNSVMDGAPGRGVLNVKSREKEAPGTYGEHLFLHAGSGSTKMNFLEPINSLMSDQEESESDDDVPYFSDIEAMILEMDLCPEDQDSYIGSKVSRYQHEDARKVIIRLEQCAQSSMQRAIASQCALAIFYGRHLKHYIKKAEVILGRATNEIDVDIDLSKEGRANKISRRQAIIRMQGDGSFLLKNLGKNVILLNGQEVATGQVGGLSSSSLIEIRGMRFVFEVNQKSVRRYLANVAKKGQVKSTNFEWSPNGVP* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1249 754 PANTHER MICROSPHERULE PROTEIN 1 8 739 IPR037912 GO:0002151|GO:0031011|GO:0071339
Vvi4g1249 754 SUPERFAMILY SMAD/FHA domain 631 725 IPR008984 GO:0005515
Vvi4g1249 754 Pfam FHA domain 642 714 IPR000253 GO:0005515
Vvi4g1249 754 FunFam Microspherule protein 1 585 734 - -
Vvi4g1249 754 Pfam N-terminal region of micro-spherule protein 12 78 IPR025999 -
Vvi4g1249 754 Gene3D - 584 734 - -
Vvi4g1249 754 ProSiteProfiles Forkhead-associated (FHA) domain profile. 642 698 IPR000253 GO:0005515
Vvi4g1249 754 SMART FHA_2 641 698 IPR000253 GO:0005515
Vvi4g1249 754 CDD FHA_MCRS1 624 724 - -
Vvi4g1249 754 MobiDBLite consensus disorder prediction 491 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1249 Vvi-Chr4 19406146 19413490 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1249 - - vvi:100266115 860.907