Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1239 ATGTCTCCAATGTCTCTGAAACCCGAAAAAGAAGGTATGGACGTGGTGGAAATTGCTAGTAGTGACGATGAAGGAGGTGTAGGAGTGGAAAGGAGGAGCAATCAACAGGTTCAAACCGACCAAGTAGGCCAGCAGACTGTTGTACCACTCCCTCCAGCGGAACCGCCCCTGTCAAGGAGTTTCTGGAAAGCTGGGGCTTATGATAACACTCCCTCTAAATTGACTCCAGCCCCAGATCAATTGGAACATGCTCGCGTTCATCCCAAGTTTCTGCACTCCAATGCCACTTCTCATAAATGGGCTTTTGGAGCAATTGCCGAGCTGTTGGACAATGCTGTTGACGAGATATGCAATGGGGCAACTTTTGTAAAGCTTGATAGAATTGATAATCGGAAGGATAACTCTCCTGCTTTACTTTTCCAAGATGATGGAGGTGGAATGGATCCTGAATCTATTCGGAAATGCATGAGCTTGGGTTACTCTTCAAAGAAGTCGAACACAACAATTGGACAATATGGTAATGGGTTCAAGACTAGTACAATGCGACTGGGTGCTGATGTAATTGTTTTCAGCCGTGCATCTCGTACGAGCCGAGCAACACAGAGCATTGGCCTTTTATCCTATACATTCTTGCGGAGAACTGGGCAGGACGATGTTATTGTTCCAATGGTTGATTTTGACATCTCTGACCATTGGGCTGAACCAATAATATACAGCTCTAAGGAAGATTGGTCTACCAACTTGAAGACCATTCTCGAATGGTCACCTTTTGCATCAAAGGAGGAGCTCATGCAACAGTTTGAGGATATTGGACCACATGGAACAAAAATAATTATATACAACCTATGGCTGAATGATGAAGGCATATTTGAATTGAATTTCGACGATGATGATGAGGACATAAGGTTAAGAGATGAAGCAAATCGTGGAAGTTTGTCAAAAGTACCCAAAAAAGTAGCTGAACTCCAATCCCATATTTCCTATTGCATCAGATATTCATTAAGGGCATATGCTTCCATTTTGTACCTCAGAAAATTTACAAACTTCCAAATTATACTAAGAGGGAAGCCTGTGCAGCAGTTTAATATAGCAGATGAGTTGAAGTATCCAAAAGTAGTTATTTACAGGCCACAGCATAATACTGCATTAAAAGAGGCTTCCATGGAAACCACCATTGGGTTTATAAAAGAGGCACCTGCTCTTGGAGTTTCGGGTTTCAACGTGTACCATAAAAATCGCCTCATCAGGCCCTTCTGGAAGGTTACAAGTGATGGTTCTTCAAAAGGGAATGGTGTCGTTGGAGTTCTTGAAGCTAATTTTATAGAACCAGCGCATGACAAACAGGATTTTGAGAGATCATCTCTGTTTATCCGTCTCGAAACAAAGCTGAAACAAATGCTAATGGACTACTGGTTTGTTTCGTCCGTTTGGTTTACCTGCTCACACTAG 1449 0.4251 MSPMSLKPEKEGMDVVEIASSDDEGGVGVERRSNQQVQTDQVGQQTVVPLPPAEPPLSRSFWKAGAYDNTPSKLTPAPDQLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEICNGATFVKLDRIDNRKDNSPALLFQDDGGGMDPESIRKCMSLGYSSKKSNTTIGQYGNGFKTSTMRLGADVIVFSRASRTSRATQSIGLLSYTFLRRTGQDDVIVPMVDFDISDHWAEPIIYSSKEDWSTNLKTILEWSPFASKEELMQQFEDIGPHGTKIIIYNLWLNDEGIFELNFDDDDEDIRLRDEANRGSLSKVPKKVAELQSHISYCIRYSLRAYASILYLRKFTNFQIILRGKPVQQFNIADELKYPKVVIYRPQHNTALKEASMETTIGFIKEAPALGVSGFNVYHKNRLIRPFWKVTSDGSSKGNGVVGVLEANFIEPAHDKQDFERSSLFIRLETKLKQMLMDYWFVSSVWFTCSH* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1239 482 MobiDBLite consensus disorder prediction 31 46 - -
Vvi4g1239 482 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 103 200 - -
Vvi4g1239 482 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 101 289 IPR036890 -
Vvi4g1239 482 FunFam MORC family CW-type zinc finger protein 4 87 288 - -
Vvi4g1239 482 Pfam Morc6 ribosomal protein S5 domain 2-like 332 471 IPR041006 -
Vvi4g1239 482 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 38 471 IPR045261 GO:0016887
Vvi4g1239 482 Gene3D - 87 289 IPR036890 -
Vvi4g1239 482 MobiDBLite consensus disorder prediction 21 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1239 Vvi-Chr4 19273071 19318911 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1239 - - vvi:100262696 930.243