Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1235 ATGGCAGAAGAGGGGCAAGTGATCGGTGTCCACTCTGTGGAGGCATGGAACGATCATCTCCAGAAGTGCAACGAGTCCAACAAGCTGATTGTTGTTGATTTCACTGCTTCATGGTGTGGACCATGCCGCTTCATTACACCATTCCTGGTTGAGCTGGCTAAGAAAATACCTACTGTCACTTTTCTTAAGGTGGATGTGGATGAATTGAAGTCTGTTGCTACTGATTGGGCTGTGGAGGCAATGCCGACTTTCATGTTTCTGAAACAAGGCAAGATTGTGGATAAGGTGGTGGGAGCCAACAAAGATAGTCTGCAGCAGACTATTGCTAAGCACATGGCTACTGCCTAA 348 0.4713 MAEEGQVIGVHSVEAWNDHLQKCNESNKLIVVDFTASWCGPCRFITPFLVELAKKIPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKQGKIVDKVVGANKDSLQQTIAKHMATA* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1235 115 SUPERFAMILY Thioredoxin-like 5 113 IPR036249 -
Vvi4g1235 115 CDD TRX_family 18 109 - -
Vvi4g1235 115 Gene3D Glutaredoxin 1 114 - -
Vvi4g1235 115 Pfam Thioredoxin 11 109 IPR013766 -
Vvi4g1235 115 PRINTS Thioredoxin family signature 77 88 - -
Vvi4g1235 115 PRINTS Thioredoxin family signature 30 38 - -
Vvi4g1235 115 PRINTS Thioredoxin family signature 38 47 - -
Vvi4g1235 115 ProSiteProfiles Thioredoxin domain profile. 1 113 IPR013766 -
Vvi4g1235 115 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Vvi4g1235 115 PANTHER THIOREDOXIN 7 110 - -
Vvi4g1235 115 FunFam Thioredoxin 6 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1235 Vvi-Chr4 19239087 19241394 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1235 K03671 - vvi:100253934 235.728