Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1234 ATGGAAGCTAACTCAGTTTCCAAGTTGTTCTTGGTGTTGTGCATGGTCTTGCAGCTGGGTTCTCAGCTGATTCAGTGTAGCGTGACCTACGACAGGAAGGCCATTGTGATTAATGGGCAGAGGAGAATCCTCATCTCCGGTTCCATACATTACCCCAGAAGCACCCCTGATATGTGGGAAGATATAATACAGAAAGCCAAAGATGGAGGCCTGGATGTCGTTGAAACCTACGTTTTTTGGAATGTCCACGAGCCTTCACCTGGCAGTTACAATTTCGAAGGGAGATATGATCTGGTTAGATTCATACGGACAGTGCAGAAAGCAGGACTGTATGCCCATCTTCGCATTGGACCCTATGTTTGTGCAGAGTGGAATTTTGGAGGGTTTCCTGTTTGGCTCAAGTATGTCCCAGGCATCAGCTTCAGAACTGACAATGAGCCTTTCAAGAGGGCAATGCAAGGGTTCACTGAGAAGATTGTAGGGCTAATGAAAAGTGAGAGGTTGTTCGAGTCCCAGGGTGGCCCCATCATACTCTCTCAGATTGAGAACGAGTATGGAGTTCAAAGTAAGTTACTTGGAGATGCTGGCCATGACTACATGACTTGGGCTGCAAATATGGCTGTTGGGTTGGGAACTGGTGTGCCCTGGGTGATGTGCAAGGAAGAAGATGCTCCAGATCCTGTGATAAACACGTGCAATGGCTTTTACTGTGATGCATTTTCTCCTAATAAACCATACAAGCCCACAATATGGACAGAGGCTTGGAGTGGCTGGTTTAACGAGTTTGGCGGTCCACTTCACCAGCGGCCAGTTCAAGATTTGGCATTTGCGGTTGCTCGATTCATACAAAAGGGAGGGTCCTTTGTTAATTACTACATGTACCATGGAGGGACCAATTTTGGACGCACTGCTGGGGGGCCTTTCATCACTACCAGCTATGACTATGATGCTCCAATTGATGAGTATGGTTTGGTCAGACAACCAAAATATGGTCATTTGAAAGAACTTCACAGATCTATTAAGCTTTGTGAGCGAGCTTTAGTTTCAGCTGATCCTATTGTTTCTTCTTTAGGGAGCTTTCAACAGGCTCATGTATACTCTTCAGATGCTGGAGATTGTGCGGCCTTCCTCTCAAACTATGATACTAAGTCTTCTGCAAGAGTGATGTTCAACAACATGCATTATAATTTACCTCCTTGGTCAATCAGCATTCTTCCTGACTGCAGAAATGCGGTCTTTAATACTGCAAAAGTTGGAGTTCAAACTGCACATATGGAAATGTTGCCGACCAATGCTGAGATGCTGTCCTGGGAGAGTTATGATGAGGATATATCTTCTCTGGACGACAGCTCAACATTCACTACCCTTGGTCTCTTGGAGCAGATAAATGTGACTAGGGATGCTAGTGATTATCTGTGGTACATAACTAGAATTGATATTGGTTCATCTGAGTCCTTCTTGCGAGGTGGGGAACTCCCTACTCTTATCCTGCAAACGACTGGCCATGCTGTGCATGTCTTTATAAATGGGCAACTTACAGGTTCTGCTTTCGGGACAAGGGAGTATAGGAGATTCACATTTACAGAAAAGGTCAACCTGCATGCTGGAACAAACACAATTGCACTGCTGAGTGTTGCAGTTGGATTACCAAATGTGGGGGGACATTTTGAGACATGGAACACAGGAATCCTGGGTCCAGTTGCACTTCATGGACTTAACCAGGGAAAATGGGACTTGTCATGGCAGAGATGGACCTACAAGGTTGGGCTGAAAGGAGAGGCCATGAATCTTGTCTCTCCAAATGGTATTTCATCTGTTGACTGGATGCAGGGCTCATTAGCTGCACAAAGGCAGCAGCCATTGACATGGCATAAGGCTTTTTTCAATGCACCCGAAGGAGATGAGCCATTGGCTTTAGACATGGAGGGTATGGGTAAAGGCCAAGTATGGATTAATGGGCAGAGTATTGGAAGATACTGGACTGCATATGCCAATGGTAATTGCCAAGGATGCAGTTACTCTGGGACATATCGACCCCCAAAGTGTCAACTTGGTTGTGGCCAACCAACCCAACGATGGTACCATGTGCCTCGTTCCTGGTTAAAGCCAACACAAAATCTTCTAGTAGTTTTTGAGGAACTTGGAGGGGATCCCTCAAGAATTTCTCTTGTTCGGAGATCAATGACTAGCGTCTGTGCTGATGTCTTCGAGTACCACCCAAACATTAAGAACTGGCATATTGAAAGCTATGGAAAAACAGAAGAGTTACACAAGCCCAAGGTTCACCTGCGGTGTGGTCCTGGCCAGTCCATTTCTTCCATCAAATTTGCCAGCTATGGAACTCCTCTGGGAACTTGTGGAAGTTTCGAGCAAGGACCTTGCCATGCTCCTGATTCATATGCCATAGTAGAGAAGAGGTGCATAGGGCGGCAAAGATGTGCAGTGACCATATCCAACACTAACTTCGCACAAGATCCTTGTCCTAACGTGTTGAAGCGGTTATCAGTGGAGGCTGTGTGTGCCCCTATAACTTCTTAA 2538 0.459 MEANSVSKLFLVLCMVLQLGSQLIQCSVTYDRKAIVINGQRRILISGSIHYPRSTPDMWEDIIQKAKDGGLDVVETYVFWNVHEPSPGSYNFEGRYDLVRFIRTVQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVGLMKSERLFESQGGPIILSQIENEYGVQSKLLGDAGHDYMTWAANMAVGLGTGVPWVMCKEEDAPDPVINTCNGFYCDAFSPNKPYKPTIWTEAWSGWFNEFGGPLHQRPVQDLAFAVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLVRQPKYGHLKELHRSIKLCERALVSADPIVSSLGSFQQAHVYSSDAGDCAAFLSNYDTKSSARVMFNNMHYNLPPWSISILPDCRNAVFNTAKVGVQTAHMEMLPTNAEMLSWESYDEDISSLDDSSTFTTLGLLEQINVTRDASDYLWYITRIDIGSSESFLRGGELPTLILQTTGHAVHVFINGQLTGSAFGTREYRRFTFTEKVNLHAGTNTIALLSVAVGLPNVGGHFETWNTGILGPVALHGLNQGKWDLSWQRWTYKVGLKGEAMNLVSPNGISSVDWMQGSLAAQRQQPLTWHKAFFNAPEGDEPLALDMEGMGKGQVWINGQSIGRYWTAYANGNCQGCSYSGTYRPPKCQLGCGQPTQRWYHVPRSWLKPTQNLLVVFEELGGDPSRISLVRRSMTSVCADVFEYHPNIKNWHIESYGKTEELHKPKVHLRCGPGQSISSIKFASYGTPLGTCGSFEQGPCHAPDSYAIVEKRCIGRQRCAVTISNTNFAQDPCPNVLKRLSVEAVCAPITS* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1234 845 Gene3D - 749 845 IPR043159 -
Vvi4g1234 845 PRINTS Glycosyl hydrolase family 35 signature 646 662 IPR001944 GO:0004553|GO:0005975
Vvi4g1234 845 PRINTS Glycosyl hydrolase family 35 signature 619 633 IPR001944 GO:0004553|GO:0005975
Vvi4g1234 845 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Vvi4g1234 845 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Vvi4g1234 845 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Vvi4g1234 845 PRINTS Glycosyl hydrolase family 35 signature 307 323 IPR001944 GO:0004553|GO:0005975
Vvi4g1234 845 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Vvi4g1234 845 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Vvi4g1234 845 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Vvi4g1234 845 ProSiteProfiles SUEL-type lectin domain profile. 755 841 IPR000922 GO:0030246
Vvi4g1234 845 FunFam Beta-galactosidase 446 583 - -
Vvi4g1234 845 Pfam Beta-sandwich domain in beta galactosidase 347 418 IPR041392 -
Vvi4g1234 845 FunFam Beta-galactosidase 23 343 - -
Vvi4g1234 845 PANTHER BETA-GALACTOSIDASE RELATED 19 742 IPR001944 GO:0004553|GO:0005975
Vvi4g1234 845 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Vvi4g1234 845 FunFam Beta-galactosidase 591 732 - -
Vvi4g1234 845 FunFam Beta-galactosidase 292 420 - -
Vvi4g1234 845 SUPERFAMILY Galactose-binding domain-like 402 573 IPR008979 -
Vvi4g1234 845 Gene3D - 438 580 - -
Vvi4g1234 845 FunFam Beta-galactosidase 752 843 - -
Vvi4g1234 845 Pfam Glycosyl hydrolases family 35 35 339 IPR031330 -
Vvi4g1234 845 Gene3D - 603 733 - -
Vvi4g1234 845 Gene3D Glycosidases 23 343 - -
Vvi4g1234 845 SUPERFAMILY (Trans)glycosidases 27 344 IPR017853 -
Vvi4g1234 845 SUPERFAMILY Galactose-binding domain-like 582 746 IPR008979 -
Vvi4g1234 845 CDD Gal_Rha_Lectin_BGal 753 840 - -
Vvi4g1234 845 Pfam Galactose binding lectin domain 763 840 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1234 Vvi-Chr4 19231762 19237649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1234 3 845 Glycoside Hydrolase AT4G36360 79.265 0.0 1466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1234 - - vvi:100232848 1769.59