Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1233 ATGCACGGCCCAAGTCATTTCCGGCGCAACCTCACGGGATTCCTTCTCCGGCGGCACCTTCTCCACACAAAACCCGGTCGCCGGTACGTTCCCAGAAACGACGACGTCCAGAAGAAAGACAATGGAGAAAAGCACATGTTTCTATACAAGAGTTGGGGTCAACACATCCTAACCAACCCAAGGGTTCTCGACACCATCGTTCGAAAATCAAATATAAAGCCCACAGATACCGTCCTTGAGATCGGACCCGGCACTGGAAATCTCACTCTAAGGCTTCTTCAAGCAGCACAAAGGGTCGTTGCAGTTGAGTTGGACGCTAGAATGGTGGAAATTCTCCGTAAACGTGTTGCTGAACATGGTCTTGAAGATCAGCTCACTGTTATATGTAAAGATGCATTGAAGACGGATTTTCCTCAGTTTGATCTTGTTGTGGCCAACATCCCGTATGGAATATCTTCGCCTCTGGTGGCTAAATTGGTATTCGGGGCGAACCCATTTCGAAGCGCCACGCTTCTCCTTCAAAAAGAGTTCGCACGGCGGCTGTTGGCTAACCCCGGCGACTCAGAGTTCAACCGTCTGGCTGTGAATGTGAAGTTGGTGGCTGAAGTTGAATTTGTTATGGATGTAAGCAAGAGGGACTTTCTTCCATGTCCAAAAGTTGACTCTTCCGTGGTTACAATACGTCCGAAAGCCGAAGTTCCGGATGTGGATTTGAATGAATGGTGTGCTTTCACGAGAACGTGTTTTAGTAAGAAGAATAAGACATTGGGTGCAACGTTTAAGCATAAGAGAAGGGTGATGGAGCTTTGGAGATTGTCCAATTTGAGGGGTTCAGAGACAGGAAATGCAGTCAGTGGGTGCAATTATGATTGTAGTTATGATGAAGATAAAGAAGAGGAAGAAGGCAATGAGAGTGATGAAGGGAATGGTGATCCATCTCCCGGGTCAGAAATGGAGATGAGTCTGTTCAAAGAGAAGATAAATGGGGTTCTGAAATTAGGTGGGTTTGATGATAAGAGGCCTGCAAAACTGTCTGGGAAGGAGCTGCTGCAACTGCTTTCCTTATTCAATCAAGCTGGAATCCATTTTCATGATCAAGCAAAGCCAAGGAATGCAGACAATATAGCTGTTGCGGCTTCTTACAGCACATAG 1152 0.4653 MHGPSHFRRNLTGFLLRRHLLHTKPGRRYVPRNDDVQKKDNGEKHMFLYKSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQAAQRVVAVELDARMVEILRKRVAEHGLEDQLTVICKDALKTDFPQFDLVVANIPYGISSPLVAKLVFGANPFRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPKVDSSVVTIRPKAEVPDVDLNEWCAFTRTCFSKKNKTLGATFKHKRRVMELWRLSNLRGSETGNAVSGCNYDCSYDEDKEEEEGNESDEGNGDPSPGSEMEMSLFKEKINGVLKLGGFDDKRPAKLSGKELLQLLSLFNQAGIHFHDQAKPRNADNIAVAASYST* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1233 383 FunFam rRNA adenine N(6)-methyltransferase 48 232 - -
Vvi4g1233 383 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 49 354 IPR011530 GO:0000179|GO:0006364
Vvi4g1233 383 Gene3D Vaccinia Virus protein VP39 48 232 IPR029063 -
Vvi4g1233 383 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 78 105 IPR020596 GO:0000154|GO:0000179|GO:0008649
Vvi4g1233 383 MobiDBLite consensus disorder prediction 294 318 - -
Vvi4g1233 383 Pfam Ribosomal RNA adenine dimethylase 50 264 IPR001737 -
Vvi4g1233 383 CDD AdoMet_MTases 77 160 - -
Vvi4g1233 383 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 48 360 IPR001737 -
Vvi4g1233 383 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 263 IPR029063 -
Vvi4g1233 383 SMART rADcneu6 62 231 IPR020598 GO:0000154|GO:0000179|GO:0008649
Vvi4g1233 383 PANTHER DIMETHYLADENOSINE TRANSFERASE 34 358 IPR001737 -
Vvi4g1233 383 FunFam rRNA adenine N(6)-methyltransferase 234 364 - -
Vvi4g1233 383 Gene3D - 234 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1233 Vvi-Chr4 19222201 19223454 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1233 K14191 - vvi:100247089 746.117