Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1229 ATGGCGTCTCCTCTCTCATCGCTCTCGTCCATCCTCTCCCAACCTCACTGCGCCATCCGCATCAGACTTCCTACGCGATGTTGCTTCGGTCTTCAATCTCTCTCCCCAAAACCCCACCTTTCTTCTTCTCGCTGCAATCTTCGTACTCCTCCCCCTTTCAGGCCCGGTTTCTCTCTCACTTTCTCGAGAAAATTCTCTCAATCCCATTCTCACCTTCCACTCTCCAACAAGTCGGAGGTTCCCAGCCTCCACTCCTTCATTGCTCAAGCCGCTGTCGCCACTTCCGAAGTGCAGCCCGACCCTGTGTCAGCTTCCGAAATTCTTCCAAGAGGTCGTATTTATCATGAGACATATGGTTGTCAAATGAATATTAATGATATGGAGATTGTCCTCTCTATCATGAAGAAAGCTGGATATAATGAAGTTGTGGAAGTTCCTGAGAGTGCTGAGGTCATTTTCATCAATACTTGTGCTATAAGAGACAATGCAGAACAAAAGGTGTGGCAGAGGCTTAACTATTTTTGGTTTCTTAAAAGGCATTGGAAGAGCAATGTCTCTATTGGAAGGGCGGATTCCCTGCACCCTCCAAAAGTAGTTGTATTAGGATGCATGGCTGAAAGGTTGAAGGATAAGATACTAGATGCGGATAAGATGGTTGATGTTGTCTGTGGGCCTGATGCTTACAGGGACTTGCCGCGGTTGTTAGAGGAAGTAGACTATGGTCAAAAAGGGATCAATACTCTTCTTTCACTTGAAGAAACTTATGCTGATATTAGCCCAGTTAGAATTTCCAAAAATTCAGTTACTGCTTTTGTCTCTATTATGAGGGGCTGCAACAATATGTGCTCGTTTTGCATTGTTCCTTTCACTAGAGGGAGGGAGCGATCACGGCCTGTGGAATCAATTGTCAGAGAGGTGGCTGAGCTTTGGAAAGAAGGAGTAAAAGAGGTCATGCTTCTTGGTCAAAATGTGAATAGCTATAATGATGCTTCTGGGTTTGACAAAGAAGTTGAACCAGGTGCTAATTGGAAACTTAGTGAAGGTTTTTCCAGCAAGTGCAAAGTGAAGAAAATGGGTTTACGCTTTTCTGATCTATTGGACCGACTGTCCACAGAATTCCCTGAAATGCGGTTCAGGTACACATCCCCACATCCTAAAGATTTCCCAGATGAGTTACTATATTTAATGCGAGATAGATATAATGTCTGCAAAAGTATCCACTTGCCTGCACAAACTGGGAGTAGTACTGTACTTGAAAGAATGCGTCGGGGTTATACACGGGAAGCGTACTTGGATCTCGTACAAAAAATACGGAGAATCGTTCCTGATGTTGGGATTACCAGTGATTTCATATGTGGCTTTTGTGGAGAAACAGAGGAGGAATATGCAGACACAATAAGCCTTGTAAAGGCTGTTGGTTATGACATGGCATACATGTTTGCTTACAGCATGAGGGAGAAAACCCATGCACATAGAAACTATGTTGATGATGTTCCTGACAACATCAAGCAGAGGAGGCTGGCAGAGATGATAGAGGTCTTCCGTGAGAGTACAGGTCAGTGTTATGACTCCCAAATTGGTACTGTTCAGCTGGTGTTAGTTGAAGGCCCCAATAAGAGAGCTCCAGATACAGAGCTAATCGGCAAGACTGATAGAGGCCATAGAGTTTCATTTAAAAATACACCCGTCCCCCATTGGGATGATGATGTTGGAGGGAATCAAAATCCTAGAGTTGGCGATTTCGTGGAGGTTCGCATATTGACGTCAACACGAGCCTCACTTTTTGGGGAAGCACTTGCTATAACTAAATTAAGCTTGTTTTACAGCAATGCAGATGAAGCCATTGCCGATGAACAGAACTTGAAATCAAGCTGTTTATGA 1881 0.4413 MASPLSSLSSILSQPHCAIRIRLPTRCCFGLQSLSPKPHLSSSRCNLRTPPPFRPGFSLTFSRKFSQSHSHLPLSNKSEVPSLHSFIAQAAVATSEVQPDPVSASEILPRGRIYHETYGCQMNINDMEIVLSIMKKAGYNEVVEVPESAEVIFINTCAIRDNAEQKVWQRLNYFWFLKRHWKSNVSIGRADSLHPPKVVVLGCMAERLKDKILDADKMVDVVCGPDAYRDLPRLLEEVDYGQKGINTLLSLEETYADISPVRISKNSVTAFVSIMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVMLLGQNVNSYNDASGFDKEVEPGANWKLSEGFSSKCKVKKMGLRFSDLLDRLSTEFPEMRFRYTSPHPKDFPDELLYLMRDRYNVCKSIHLPAQTGSSTVLERMRRGYTREAYLDLVQKIRRIVPDVGITSDFICGFCGETEEEYADTISLVKAVGYDMAYMFAYSMREKTHAHRNYVDDVPDNIKQRRLAEMIEVFRESTGQCYDSQIGTVQLVLVEGPNKRAPDTELIGKTDRGHRVSFKNTPVPHWDDDVGGNQNPRVGDFVEVRILTSTRASLFGEALAITKLSLFYSNADEAIADEQNLKSSCL* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1229 626 SFLD B12-binding domain containing 193 488 - -
Vvi4g1229 626 SFLD methylthiotransferase 111 604 IPR005839 GO:0006400|GO:0016740|GO:0051539
Vvi4g1229 626 ProSiteProfiles Radical SAM core domain profile. 264 520 IPR007197 GO:0003824|GO:0051536
Vvi4g1229 626 Gene3D - 112 253 IPR038135 -
Vvi4g1229 626 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 111 240 IPR013848 GO:0035596|GO:0051539
Vvi4g1229 626 Pfam Radical SAM superfamily 272 469 IPR007197 GO:0003824|GO:0051536
Vvi4g1229 626 Pfam TRAM domain 523 599 IPR002792 -
Vvi4g1229 626 CDD Radical_SAM 272 513 - -
Vvi4g1229 626 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 67 613 - -
Vvi4g1229 626 ProSitePatterns Methylthiotransferase radical SAM domain signature. 272 292 IPR020612 GO:0051539
Vvi4g1229 626 FunFam CDK5 regulatory subunit-associated protein 1 266 525 - -
Vvi4g1229 626 SUPERFAMILY Radical SAM enzymes 262 516 - -
Vvi4g1229 626 SMART MiaB 268 509 IPR006638 GO:0003824|GO:0051536
Vvi4g1229 626 SFLD CDK5RAP1 111 604 - -
Vvi4g1229 626 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 112 594 IPR005839 GO:0006400|GO:0016740|GO:0051539
Vvi4g1229 626 Gene3D tm_1862 like domain 266 524 IPR023404 -
Vvi4g1229 626 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 112 600 IPR006463 GO:0006400|GO:0016740|GO:0051539
Vvi4g1229 626 Pfam Uncharacterized protein family UPF0004 112 224 IPR013848 GO:0035596|GO:0051539
Vvi4g1229 626 ProSiteProfiles TRAM domain profile. 523 600 IPR002792 -
Vvi4g1229 626 FunFam CDK5 regulatory subunit-associated protein 1 111 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1229 Vvi-Chr4 19181749 19186571 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1229 - - vvi:100266017 1258.82