Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1228 ATGAGAACGGAAATGTGGAGAGCCGCTCATCGACTTATCAGCCATCGTTCCAAGAACCTCTGTGATCCTCGGTGGAACCCTAATTTTCACAATTCAATTCAAAGCTACTCTTCTGGGTTTACATATAATTTTGGTAGAACCTGTAAGCCATTTAACCCATATCTTAGACGTCAGGGGAGCGATGTTCAGATATGTATCTATCCCACAAGAGATTACATTGAAAATCTTCATGGATCTACTGAACTGTGTTATGGAAAATCTTTCAGAATCCAGAACAGATTTTATGGTTCAGCCACTACAAAAATACAGAGGAACCCCATCTTTTCAACAATAAATTCTGATGATATTAATCATTTTAGGGAGATACTAGGAGAGAAAAATGTTATTCAGGATGAAGATAGGCTGTCTGCTGCAAATATGGATTGGATGCGGAAATACAAAGGCTCAAGTAAGCTTCTGCTTCAACCTAGGAGCACTGAGGAGGTCTCTCAAATCCTCAAATATTGTAATTCCAGATGTTTGGCTGTTGTTCCCCAAGGTGGAAATACTGGTCTTGTAGGTGGAAGTGTTCCTGTTTTTGATGAGGTGATTATTAATATTGGCTCAATGAATAACATCATATCTTTTGACAAGGTCAGTGGTATACTGGTATGCGAAGCAGGATGCATATTGGAAAACCTGATTTCTTTCGTGGATAATCAAGGATTTATTATGCCACTAGACTTAGGTGCAAAAGGAAGCTGCCAAATTGGTGGAAATATTTCAACTAATGCTGGAGGCCTGCGCTTGGTTCGTTATGGATCACTTCATGGGAATGTTCTCGGTCTTGAAGCTGTTTTAGCAAATGGTACTGTGCTTGACATGCTTGGGACTTTACGGAAAGATAATACTGGTTATGACCTAAAGCATTTGTTTATAGGAAGTGAAGGATCCTTAGGAGTTGTAACTAAAGTTTCCATACTTACCCCTCCAAAGCTTTCTTCAGTAAATGTAGCATTCCTTGCTTGTAAAGATTATCTAAGTTGCCAGAAACTTCTACTGGAAGCCAAGAGGAAACTTGGGGAAATTCTCTCTGCATTTGAATTTATAGACAACCAGTCATTCAATGTGGTTCTGAATCATTTAGAAGGAGCCCGGAACCCATTACCTCCCTCGATGCATAACTTTTATGTTCTGATTGAGACAACAGGAAGTGATGAATCTTATGATAAAGAGAAACTTGAAGCCTTCTTACTTCACTCAATGGAAGGTGGTTTGGTATCTGATGGTGTTCTGGCACAGGATATAAACCAAGCATCCTCATTCTGGCATATTCGTGAGGGTATACCTGAATCAATAATGAAAGCAGGGGCTGTATACAAATATGATTTGTCAATACCTGTTGAAAAGATGTATGATCTTGTTGAGGAAATGCGAGTACGGCTTGGTCATTCAGCCAAAGTAATGGGCTATGGTCATCTTGGAGATTCCAACTTGCATCTCAATATTTCAACACCACAGTATGATGATGCTATTTTAGCACAAATTGAACCCTTTGTCTATGAATGGACATCTAAACATCGTGGGAGTATTAGTGCAGAGCATGGCGTCGGACTGATGAAAGCTAATAAGATACACTACAGCAAGTCAGCTGAAACGGCAAGTCTCGTGCAACTAATGGCTTCCATCAAGAAGTTGCTAGATCCTAATGGGATCCTCAACCCATATAAAGTTCTTCCAGGCTCCCTTGCTTCTTCCAGCTGA 1743 0.4005 MRTEMWRAAHRLISHRSKNLCDPRWNPNFHNSIQSYSSGFTYNFGRTCKPFNPYLRRQGSDVQICIYPTRDYIENLHGSTELCYGKSFRIQNRFYGSATTKIQRNPIFSTINSDDINHFREILGEKNVIQDEDRLSAANMDWMRKYKGSSKLLLQPRSTEEVSQILKYCNSRCLAVVPQGGNTGLVGGSVPVFDEVIINIGSMNNIISFDKVSGILVCEAGCILENLISFVDNQGFIMPLDLGAKGSCQIGGNISTNAGGLRLVRYGSLHGNVLGLEAVLANGTVLDMLGTLRKDNTGYDLKHLFIGSEGSLGVVTKVSILTPPKLSSVNVAFLACKDYLSCQKLLLEAKRKLGEILSAFEFIDNQSFNVVLNHLEGARNPLPPSMHNFYVLIETTGSDESYDKEKLEAFLLHSMEGGLVSDGVLAQDINQASSFWHIREGIPESIMKAGAVYKYDLSIPVEKMYDLVEEMRVRLGHSAKVMGYGHLGDSNLHLNISTPQYDDAILAQIEPFVYEWTSKHRGSISAEHGVGLMKANKIHYSKSAETASLVQLMASIKKLLDPNGILNPYKVLPGSLASSS* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1228 580 PANTHER D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL 96 575 - -
Vvi4g1228 580 SUPERFAMILY FAD-binding/transporter-associated domain-like 113 324 IPR036318 GO:0050660
Vvi4g1228 580 Pfam FAD linked oxidases, C-terminal domain 328 571 IPR004113 GO:0003824|GO:0050660
Vvi4g1228 580 Gene3D - 450 528 - -
Vvi4g1228 580 Gene3D - 529 572 IPR016171 -
Vvi4g1228 580 FunFam D-2-hydroxyglutarate dehydrogenase, mitochondrial 102 201 - -
Vvi4g1228 580 FunFam D-2-hydroxyglutarate dehydrogenase, mitochondrial 204 324 - -
Vvi4g1228 580 Gene3D - 327 447 - -
Vvi4g1228 580 Coils Coil 577 580 - -
Vvi4g1228 580 ProSiteProfiles PCMH-type FAD-binding domain profile. 146 325 IPR016166 GO:0071949
Vvi4g1228 580 Pfam FAD binding domain 152 287 IPR006094 GO:0050660
Vvi4g1228 580 SUPERFAMILY FAD-linked oxidases, C-terminal domain 299 573 IPR016164 GO:0003824|GO:0050660
Vvi4g1228 580 FunFam D-2-hydroxyglutarate dehydrogenase mitochondrial 450 528 - -
Vvi4g1228 580 FunFam D-2-hydroxyglutarate dehydrogenase mitochondrial 326 448 - -
Vvi4g1228 580 Gene3D - 204 325 IPR016169 -
Vvi4g1228 580 FunFam D-lactate dehydrogenase mitochondrial 529 572 - -
Vvi4g1228 580 Gene3D - 101 201 IPR016167 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1228 Vvi-Chr4 19164272 19178094 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1228 K18204 - vvi:100253926 1154.43