Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1227 ATGACCAGCTCCTCCGCCACCTCTCGCAAGGCACTTAGCAAAATCGCTTGCAATCGGCTCCAGAAAGAGCTTGTTGAGTGGCAGGTCAATCCACCCGCCGGTTTCAAACACAAAGTCACCGACAATCTTCAAAGGTGGGTCATAGAAGTGCATGGAGCTCCAGGAACTCTCTACGCTAACGAATCTTACCAGCTTCAGGTTGATTTTCCTGAGCATTACCCCATGGAAGCTCCACAGGTTATTTTTCTGCAGCCGGCTCCTCTGCACCCTCATATTTATAGCAATGGTCATATTTGTCTAGATATTTTGTATGATTCTTGGTCCCCAGCCATGACAGTTAGTTCTATCTGCATCAGCATTCTCTCCATGCTATCAAGCTCAACTGTGAAGCAACGTCCTGAAGATAATGACCGTTATGTGAGGAACTGCAGGAATGGCAGATCCCCCAAGGAGACCAGGTGGTGGTTCCATGACGATAAAGTCTAA 486 0.4774 MTSSSATSRKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVHGAPGTLYANESYQLQVDFPEHYPMEAPQVIFLQPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTVKQRPEDNDRYVRNCRNGRSPKETRWWFHDDKV* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1227 161 Pfam Ubiquitin-conjugating enzyme 19 154 IPR000608 -
Vvi4g1227 161 Gene3D Ubiquitin Conjugating Enzyme 15 161 IPR016135 -
Vvi4g1227 161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 15 139 - -
Vvi4g1227 161 SUPERFAMILY UBC-like 6 126 IPR016135 -
Vvi4g1227 161 FunFam probable ubiquitin-conjugating enzyme E2 16 13 161 - -
Vvi4g1227 161 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 15 161 IPR000608 -
Vvi4g1227 161 SMART ubc_7 18 161 - -
Vvi4g1227 161 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 103 IPR023313 -
Vvi4g1227 161 CDD UBCc 17 117 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1227 Vvi-Chr4 19153446 19160809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1227 12 124 Miscellaneous Gene Families AT1G17280 28.814 5.09e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1227 K10688 - vvi:100260813 328.946