Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1226 ATGAGTGACCAGGTGAGACACCAAAGAATCAAAATCAACGGTATATGGATGCACATAGCTGAGCAGGGGACAGGACCACTTGTACTGCTCCTTCATGGTTTCCCACAATTCTGGTATTCATGGCGTCATCAGATGGGTTGCTTGGCCAACAAAGGTTACCATGTTGTTGCACCTGATATGAGAGGCTACGGTGATACTGATTCTCCTGTTAGTCCTACTTCCTATACTGTTTTTCATCTTGTTGGCGACATCATCGGCCTTATCGACCATTTTGGTGAACAAAAGGTGGTTGTGGTAGGAGCTGACTGGGGAGCTGTAGCTGCATGGCATCTCAGTCTGTTCAGGCCTGATAGAGTTAAGGGTTTGGTATGTCTTTGTGTTCCATTCAAGTCCAGACACCCAGCCAAACCTACTGAATTCTTCACACAAACTTTTGGAGATGGCTTCTATATCACTCAGTTCCAGGAACCGGGAAGAGCAGAGAGGGCATTTGCAAGATATGATTATCTGGCAGTGATGAAGAAGTTCCTCCTGATCAACAAGACAGATCTACTAATAGCTCCGCCCGGCATGGAGATTATTGATTATCTGGAGACGCCATCTCTGTTACCAACATGGATAACTGAAGAAGAGCTAGGGGTCTATGCGGACAAATTTCAGGAGTCTGGGTTCACCGGTGGTCTCAACTACTATCGTGCTATGGACCTGAGTTGGGAGCTTCTTGCACCGTGGCAAGGATCAAAAATCACAATTCCATCCAAGTTGATATTTGGTGACAAAGATATTGGTTTTAAAGACGGTGGTACAAAGGAATACATAGAAGGAAATACCTTCAAGACACTTGTTCCCGACCATGAAGTCGTTATTCTTGATGGCCACCATTTCATCCAAGAAGAGAAACCTCAACAGGTCTCTGCTGAAATTCTGTCCTTCCTCGCTAAATTTTCTTGTGATTAG 957 0.4493 MSDQVRHQRIKINGIWMHIAEQGTGPLVLLLHGFPQFWYSWRHQMGCLANKGYHVVAPDMRGYGDTDSPVSPTSYTVFHLVGDIIGLIDHFGEQKVVVVGADWGAVAAWHLSLFRPDRVKGLVCLCVPFKSRHPAKPTEFFTQTFGDGFYITQFQEPGRAERAFARYDYLAVMKKFLLINKTDLLIAPPGMEIIDYLETPSLLPTWITEEELGVYADKFQESGFTGGLNYYRAMDLSWELLAPWQGSKITIPSKLIFGDKDIGFKDGGTKEYIEGNTFKTLVPDHEVVILDGHHFIQEEKPQQVSAEILSFLAKFSCD* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1226 318 SUPERFAMILY alpha/beta-Hydrolases 4 314 IPR029058 -
Vvi4g1226 318 PRINTS Epoxide hydrolase signature 289 311 IPR000639 GO:0003824
Vvi4g1226 318 PRINTS Epoxide hydrolase signature 52 67 IPR000639 GO:0003824
Vvi4g1226 318 PRINTS Epoxide hydrolase signature 112 125 IPR000639 GO:0003824
Vvi4g1226 318 PRINTS Epoxide hydrolase signature 98 111 IPR000639 GO:0003824
Vvi4g1226 318 PRINTS Epoxide hydrolase signature 32 50 IPR000639 GO:0003824
Vvi4g1226 318 PRINTS Epoxide hydrolase signature 251 267 IPR000639 GO:0003824
Vvi4g1226 318 PANTHER EPOXIDE HYDROLASE 7 313 - -
Vvi4g1226 318 PRINTS Alpha/beta hydrolase fold signature 52 67 IPR000073 -
Vvi4g1226 318 PRINTS Alpha/beta hydrolase fold signature 112 125 IPR000073 -
Vvi4g1226 318 PRINTS Alpha/beta hydrolase fold signature 98 111 IPR000073 -
Vvi4g1226 318 FunFam Epoxide hydrolase 3 315 - -
Vvi4g1226 318 Gene3D alpha/beta hydrolase 2 316 IPR029058 -
Vvi4g1226 318 Pfam alpha/beta hydrolase fold 26 301 IPR000073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1226 Vvi-Chr4 19151167 19152416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1226 1 316 Acyl Lipid Metabolism Gene Families AT3G51000 63.240 1.05e-149 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1226 - - vvi:100255741 649.818