Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1224 ATGAGGTATTTTGGAAGCATTGTCCCTCAGCTGTCAAGGAATCTCAAGCTCCGCATCACTCAGAACCCTACCTTTTGTGATTCGTTAAACCCTAATTCTCATTTATGGAACCGTTTGAATTTTGTACTGAAATACACTTCCTCTGCGCAAGTCCCCTCCGAGAGGGTTTCGTCCATCGTAGACGAGATCTCCGGTCTCACCTTATTAGAGGTTTCTGATCTGACGGAACTTTTGCGCAAAAAATTGGATATAAATGAAATGCCGGTGATGGCGGTGATGATGCCGGGCATGGGGTTCGGGGTGAGAGGGGCCGGCGGAGCGGCGCCAAAGGCGGCAGAGGTGAAGGCGGCTGAGAAGACGGCGTTCGATTTGAAGCTAGAGGCGTTCGATGCGGCGGCGAAGATTAAGATTATTAAGGAAGTGAGGACGTTTACGGATTTGGGATTGAAGGAGGCAAAAGATTTGGTGGAGCATGCGCCGACACTTTTGAAGAAGGGGGTGCCAAAGGAGGAGGCGGAGAATATCATTGAGAAGATGAAGGCGGTGGGCGCCAAGGTCACCATGGAATAA 570 0.5035 MRYFGSIVPQLSRNLKLRITQNPTFCDSLNPNSHLWNRLNFVLKYTSSAQVPSERVSSIVDEISGLTLLEVSDLTELLRKKLDINEMPVMAVMMPGMGFGVRGAGGAAPKAAEVKAAEKTAFDLKLEAFDAAAKIKIIKEVRTFTDLGLKEAKDLVEHAPTLLKKGVPKEEAENIIEKMKAVGAKVTME* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1224 189 Hamap 50S ribosomal protein L7/L12 [rplL]. 53 189 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vvi4g1224 189 PANTHER 39S RIBOSOMAL PROTEIN L12 29 189 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vvi4g1224 189 NCBIfam 50S ribosomal protein L7/L12 57 188 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vvi4g1224 189 CDD Ribosomal_L7_L12 54 188 IPR000206 GO:0003735|GO:0005840|GO:0006412
Vvi4g1224 189 Gene3D Single helix bin 55 117 IPR036235 GO:0003735|GO:0005840|GO:0006412
Vvi4g1224 189 Gene3D - 118 188 IPR014719 -
Vvi4g1224 189 SUPERFAMILY Ribosomal protein L7/12, oligomerisation (N-terminal) domain 56 123 IPR036235 GO:0003735|GO:0005840|GO:0006412
Vvi4g1224 189 Pfam Ribosomal protein L7/L12 dimerisation domain 57 107 IPR008932 GO:0003735|GO:0005840|GO:0006412
Vvi4g1224 189 Pfam Ribosomal protein L7/L12 C-terminal domain 122 188 IPR013823 GO:0003735|GO:0006412
Vvi4g1224 189 SUPERFAMILY ClpS-like 118 188 IPR014719 -
Vvi4g1224 189 FunFam 50S ribosomal protein L7/L12 118 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1224 Vvi-Chr4 19138680 19139249 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1224 K02935 - vvi:100250558 315.079