Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1216 ATGAAGTCGAAGCGAGTTCTTCTGGTTTCGCACGAGCTCTCTCTTTCAGGTGGCCCGCTATTATTGATGGAGCTAGCATTTCTGTTAAGAAGTGTTGGCGCTGAAGTTTGTTGGATTACAAACCATAAACCATCAGAAACAGATGAAGTGATATACAGTTTGGAGAATAAAATGCAACACCGAGGAGTACAGGTTTTGCCTGCAAAGGGTCGAGAAGCTATAAACAGAGCTTTAAAAGCTGATTTGCTTGTTTTAAACACTGTCATGGCTGGAAAATGGCTGGATGATGTCCTGAAGGAAAATGTCCCTCACGTTCTTCCAAAAGTGTTGTGGTGGATTCATGAAATACAAGGCCATTATTTCCAATTAGAGTATGTCAGGCACCTCCCTCTGGTTGCTGCCGCTATGATTGATTCACATGTAGCAGCAGAGTACTGGAAAACCGGAACTAGAGATTATTTGAGGATTAAAATGCCTGATACCTATGTGGTTCACCTTGGCAATAGCAAGGACCTCATGGACATTGCTGAAGATAGTGTGGCAAAAAGGGTTTTGCGTGAACATGTTCGGGAGTCTCTTGGAGTTCGGGATGAAGATGTACTCTTTGCAATGATAAACAGTGTTTCACGTGGAAAAGGCCAGGATTTATTTCTGCAATCCTTCTATGAGAGCTTGCAATTGATTATACAAAAGAAATTGAGGGTTCCATCAATGCATGCAGTAATTGTGGGAAGTGACATGACTGCTCAGCCCAAGTTTGAGTCACAACTGCGTGATTTTGTAAGAGTAAAAAAGATTCAAGATCGTGTTCACTTTGTAAATAAAACGCTGACAGTGGCCCCTTACCTAGCTGCCATTGATGTTCTTGTTCAGAATTCCCAGGCAGGAGAGTGCTTTGGAAGGATAACCATTGAAGCCATGGCATTTCAGCTACCTGTATTGGGAACAGCAGCAGGAGGCACCACCGAGATTGTAGTGAATGGGTCAACAGGTTTGTTACACCCAACAGGGAAAGAAGGGGTCACTCCTCTTGCAAAAAACATTGTCACACTAGCCACTAATGTTCATAGAAGGCTTACCCTGGGAAAGACAGGATATGAGAAGGTAAAAGAAACGTTTTTGGAACACCACATGGCACATAGGATTGCCACAGTTTTAAAGGAGGTGTTGCAGAAAGCAAAGAGTCACCCAAAACTGTAG 1200 0.4308 MKSKRVLLVSHELSLSGGPLLLMELAFLLRSVGAEVCWITNHKPSETDEVIYSLENKMQHRGVQVLPAKGREAINRALKADLLVLNTVMAGKWLDDVLKENVPHVLPKVLWWIHEIQGHYFQLEYVRHLPLVAAAMIDSHVAAEYWKTGTRDYLRIKMPDTYVVHLGNSKDLMDIAEDSVAKRVLREHVRESLGVRDEDVLFAMINSVSRGKGQDLFLQSFYESLQLIIQKKLRVPSMHAVIVGSDMTAQPKFESQLRDFVRVKKIQDRVHFVNKTLTVAPYLAAIDVLVQNSQAGECFGRITIEAMAFQLPVLGTAAGGTTEIVVNGSTGLLHPTGKEGVTPLAKNIVTLATNVHRRLTLGKTGYEKVKETFLEHHMAHRIATVLKEVLQKAKSHPKL* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1216 399 Gene3D Glycogen Phosphorylase B; 176 373 - -
Vvi4g1216 399 PANTHER GLYCOSYLTRANSFERASE 1 396 - -
Vvi4g1216 399 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 389 - -
Vvi4g1216 399 CDD GT4_PimA-like 30 387 - -
Vvi4g1216 399 Pfam Glycosyl transferases group 1 188 362 IPR001296 GO:0016757
Vvi4g1216 399 FunFam UDP-Glycosyltransferase superfamily protein 176 373 - -
Vvi4g1216 399 Pfam Glycosyl-transferase family 4 2 181 IPR041693 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1216 Vvi-Chr4 19042212 19048922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1216 1 395 Glycosyltransferase AT1G75420 76.263 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1216 - - vvi:100243789 783.482