Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1214 ATGGTCAAATTCTGTACAAAGACATGTCTCTTCATTCTCCCGAAAACCTCCTATTGTCAGCTGCAAACTCAATCTTTCATTCCCTTCTCTGTACGCCAAGAACAAAAGATTTTAGAATCGCGGCTTGTGTCAGTCCTTCATGGCTGCACCCACATCAACCAAGTCAAACAAGTGCACGCCCACATCTTCCGAAAGGGTCTGGAACAGTGCTGCTTTGTTCTCGCCAAGCTCCTCCGTACGCTCACCAAACTCGATGTCCCAATGGACCCCTATCCGCGCCTTGTCTTCCAACAAGTTGAATACCCCAACCCATTTCTTTGGACCGCGCTTATTCGCGGTTACGCTCTTCAAGGGCCCTTTATGGAATCGGTTCTTCTGTATAATAGTATGAGAAGGCAAGGCATTGGCCCTGTTTCGTTTACTTTTACTGCACTGCTCAAGGCTTGTAGCGCTGCTCTTGATGTCAATTTGGGGAGGCAGGTACATACCCAGACGATTTTGATTGGCGGGTTTGGTTCTGATTTATATGTTGGGAATACTTTGATTGATATGTATGTGAAATGCGGGTGTTTGGGTTGTGGACATCGGGTATTCGATGAAATGCTGGACAGAGATGTGATTTCTTGGACTTCTTTGATTGTTGCATATGCGAAGGTTGGAAACATGGAGGCTGCAAGTGAGTTGTTTGATGGATTACCCATGAAGGATATGGTGGCATGGACAGCAATGGTCACAGGGTATGCCCAAAATGCTAGGCCAAGAGAGGCATTGGAAGTTTTTGAAAGAATGCAGGCTGCAGGCGTTAAAACGGATGAGGTTACCTTGGTTGGTGTCATTTCAGCATGTGCTCAACTAGGTGCAGCTAAGTATGCTAATTGGGTCCGGGACGTTGCAGAGCAATCTGGATTTGGGCCTACCAGTAATGTTGTTGTGGGATCTGCATTGATTGATATGTATGCGAAGTGTGGGAGCGTAGAAGATGCTTACAAGGTTTTTGAAAGAATGGAGGAAAGGAATGTGTATTCTTATAGTTCAATGATTGTGGGGTTTGCAATGCATGGTTTGGCTGGTGCTGCAATGGAATTATTTGATGAGATGTTGAAGACAGAGATAAAACCAAACAGGGTCACGTTTATAGGTGTTCTTACTGCTTGCAGCCATGCAGGTATGGTAGAACAAGGTCAGCAATTATTCGCAATGATGGAAGAATGTCATGGTGTTGCACCATCAGAGGATCACTATGCCTGCATGGTGGATCTTCTTGGTCGAGCTGGACGCTTGGAAGAAGCTCTCAACCTTGTAAAAATGATGCCCATGAATCCCCATGGGGGCGTGTGGGGAGCACTGCTTGGGGCATGTCGCATCCACGGGAATCCTGATATGGCCCAGATTGCTGCAAGCCATTTGTTTGAGCTTGAACCCAATGGTATTGGGAACTACATCTTGCTTTCCAATATATATGCTTCAGCAGGCAGGTGGGATGATGTTTCAAAGGTAAGGAAGTTAATGAGGGCGAAGGGTCTGAAAAAGAATCCTGGATGCAGCTGGGTTGAAGGAAAGAAAGGGATAATTCACGAGTTCTTTGCAGGTGATATGTCCCATCCGAAGTCCAGGGAGATTAAGCAGGCACTGGAGGATCTTCTCGACAGATTAAAGTATCTTGGCTACCAGCCAAACCTGAGTTCTGTGGCCTATGACATTAGTGATGAAGAGAAGAAGCGGTTGCTAATGAGTCATAGTGAGAAGCTTGCTCTGGCGTTTGGCCTGCTCACTACAAATGCTGGGTGCACCATTAGAATTGTGAAGAACCTCAGGATATGCGAAGATTGCCATTCAGTAATGTGTGGTGCTTCTCAGATCACAGGGAGAGAAATTGTTGTCAGGGATAACATGAGATTCCACCATTTTCGCGATGGGAGATGCTCCTGTGGTAACTTCTGGTGA 1944 0.4614 MVKFCTKTCLFILPKTSYCQLQTQSFIPFSVRQEQKILESRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1214 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 235 IPR002885 -
Vvi4g1214 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Vvi4g1214 647 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 216 584 IPR046960 GO:0003723|GO:0009451
Vvi4g1214 647 NCBIfam pentatricopeptide repeat 341 374 IPR002885 -
Vvi4g1214 647 NCBIfam pentatricopeptide repeat 207 231 IPR002885 -
Vvi4g1214 647 NCBIfam pentatricopeptide repeat 179 206 IPR002885 -
Vvi4g1214 647 NCBIfam pentatricopeptide repeat 238 271 IPR002885 -
Vvi4g1214 647 NCBIfam pentatricopeptide repeat 314 340 IPR002885 -
Vvi4g1214 647 NCBIfam pentatricopeptide repeat 414 437 IPR002885 -
Vvi4g1214 647 NCBIfam pentatricopeptide repeat 106 137 IPR002885 -
Vvi4g1214 647 Pfam E motif 456 518 IPR046848 -
Vvi4g1214 647 FunFam Pentatricopeptide repeat-containing protein At1g09190 34 167 - -
Vvi4g1214 647 Gene3D Tetratricopeptide repeat domain 313 547 IPR011990 GO:0005515
Vvi4g1214 647 Gene3D Tetratricopeptide repeat domain 170 303 IPR011990 GO:0005515
Vvi4g1214 647 Pfam PPR repeat 179 205 IPR002885 -
Vvi4g1214 647 Pfam PPR repeat 414 438 IPR002885 -
Vvi4g1214 647 Pfam PPR repeat 207 230 IPR002885 -
Vvi4g1214 647 Pfam PPR repeat 106 135 IPR002885 -
Vvi4g1214 647 Pfam DYW family of nucleic acid deaminases 555 647 IPR032867 GO:0008270
Vvi4g1214 647 FunFam Pentatricopeptide repeat-containing protein At4g14820 312 547 - -
Vvi4g1214 647 Pfam PPR repeat family 338 386 IPR002885 -
Vvi4g1214 647 Pfam PPR repeat family 235 283 IPR002885 -
Vvi4g1214 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Vvi4g1214 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Vvi4g1214 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 338 IPR002885 -
Vvi4g1214 647 Pfam E+ motif 524 551 IPR046849 -
Vvi4g1214 647 Gene3D Tetratricopeptide repeat domain 13 169 IPR011990 GO:0005515
Vvi4g1214 647 FunFam Pentatricopeptide repeat-containing protein At5g44230 168 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1214 Vvi-Chr4 19037867 19039810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1214 42 647 Glycoside Hydrolase AT3G49170 36.995 1.21e-130 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1214 - - vvi:100266109 1316.98