Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1211 ATGATAGCGGCTATTTCATGGATCCCAAAAGGGGTGTCAAAGTCTGTTCCTTCGGTGGTTGAGCCACCTTCAAAGGAGGAAATTGAAGAGATGCTCAAGAACGGTGCTTTGGAGAGATGTGGAGATAGTGAAAGCGAGGAAGATGATGAAATTATGGATGCTGATGCTGCCAAGCAGGATGATACAGTTGCCCATGCATTAGCTGCTGCAGATGCCCTGGGCAAGACTCCAAAGAACTCAGGAACAAGTTTCCTGGACATAACTGATGGTCTGAAGGAACTTGACATGGATCATTATGATGATGAGGATGATGGCATTGAGGTATTTAGCAAGGGGCTTGGGGACACCTACTACCCAAGTAATGACATGGATCCATACCTGAAGGATAACAATGATGATGACTCTGAAGAGGTTGAGGATATGACTATAAAAGCAGAGGATTCAGTCATTGTTTGTGCACGTAATGCGGATGATCTCAGTCATCTTGAGGTTTGGATATTTGAGGAATCAGAGGATGGTGATTCAAACATGTATGTACATCATGATGTCATAATCCCAGCATTTCCCCTTTGCACAGCATGGCTTGATTGCCCACTTAAAGGTGGAGAAAAAGGGAACTTTATAGCTGTAGGCTCAATGGAAACTTCCATTGAGATATGGGACCTTGACATTATTGATGAAGTCCAACCATTTTTGGTATTAGGTGGTGTTGCTGAGAAGAAGAAGAAGAAAGCAAAGAAGACATCGGTCAAATACAGAAAAGGCAGTCACACCGATTCAGTGCTTGGTCTTGCTTGGAACAAGGAATACAGGAATATACTTGCTAGTGCAAGTGCTGATAAACTAGTCAAGATTTGGGATGTCACTTCAGGAGAATGCAATATCACCATGGATCACCATACGGACAAGGTTCAAGTAGTTGCCTGGAATCATCATGAGCCCCAAGTTCTTCTAAGTGGATCGTTTGATCGTTCAGTAGTTATGAAGGATGGGAGGATACCAACGCATGCTGGTTTTAAGTGGTCAGTCACAGCTGATGTTGAAAGCTTGGCATGGGATCCACACACTAATCACTCTTTTGTGGTCAGTTTGGAGGATGGTACAGTTCAAGGTTTTGATGTTCGTACTGCTAAGTCAGATTCGGCTTCTGAGTCAAAGCCAGCTTTCACTCTCCATGCACATGACCAAGCTGTTTGCACAATCTCCTACAATCCCTTGGCACCTAATTTTCTTGCAACCGGATCCACAGATAAAATGGTAAAACTTTGGGATTTGTCAAATAACCAACCTTCCTGTGTTGCAACCAGGAATCCTAAAGCTGGAGCTGTCTTTTCCATTTCCTTCTCAGAGGACAGACCCTTTTTGCTGGCTATAGGGGGTTCTACGGGAAAATTGGAGGTATGGGATACACTATCTGAAGCTCCAGTCTCAAGAAAATTTGGCAACTACAGTAGTCAGAGCATATCTAAACCCGAGGCTTGA 1482 0.4372 MIAAISWIPKGVSKSVPSVVEPPSKEEIEEMLKNGALERCGDSESEEDDEIMDADAAKQDDTVAHALAAADALGKTPKNSGTSFLDITDGLKELDMDHYDDEDDGIEVFSKGLGDTYYPSNDMDPYLKDNNDDDSEEVEDMTIKAEDSVIVCARNADDLSHLEVWIFEESEDGDSNMYVHHDVIIPAFPLCTAWLDCPLKGGEKGNFIAVGSMETSIEIWDLDIIDEVQPFLVLGGVAEKKKKKAKKTSVKYRKGSHTDSVLGLAWNKEYRNILASASADKLVKIWDVTSGECNITMDHHTDKVQVVAWNHHEPQVLLSGSFDRSVVMKDGRIPTHAGFKWSVTADVESLAWDPHTNHSFVVSLEDGTVQGFDVRTAKSDSASESKPAFTLHAHDQAVCTISYNPLAPNFLATGSTDKMVKLWDLSNNQPSCVATRNPKAGAVFSISFSEDRPFLLAIGGSTGKLEVWDTLSEAPVSRKFGNYSSQSISKPEA* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1211 493 Gene3D - 96 329 IPR015943 GO:0005515
Vvi4g1211 493 FunFam Putative WD repeat-containing protein C17D11.16 337 479 - -
Vvi4g1211 493 SMART WD40_4 384 424 IPR001680 GO:0005515
Vvi4g1211 493 SMART WD40_4 290 330 IPR001680 GO:0005515
Vvi4g1211 493 SMART WD40_4 247 287 IPR001680 GO:0005515
Vvi4g1211 493 SMART WD40_4 429 469 IPR001680 GO:0005515
Vvi4g1211 493 SMART WD40_4 334 373 IPR001680 GO:0005515
Vvi4g1211 493 ProSiteProfiles Trp-Asp (WD) repeats profile. 254 296 IPR001680 GO:0005515
Vvi4g1211 493 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 429 - -
Vvi4g1211 493 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 254 292 - -
Vvi4g1211 493 FunFam Transducin/WD40 repeat-like superfamily protein 80 335 - -
Vvi4g1211 493 SUPERFAMILY WD40 repeat-like 204 476 IPR036322 GO:0005515
Vvi4g1211 493 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 482 IPR044285 GO:0006364
Vvi4g1211 493 ProSitePatterns Trp-Asp (WD) repeats signature. 274 288 IPR019775 -
Vvi4g1211 493 PRINTS G protein beta WD-40 repeat signature 411 425 IPR020472 -
Vvi4g1211 493 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Vvi4g1211 493 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Vvi4g1211 493 Pfam WD domain, G-beta repeat 388 424 IPR001680 GO:0005515
Vvi4g1211 493 Pfam WD domain, G-beta repeat 256 287 IPR001680 GO:0005515
Vvi4g1211 493 ProSitePatterns Trp-Asp (WD) repeats signature. 411 425 IPR019775 -
Vvi4g1211 493 Gene3D - 330 488 IPR015943 GO:0005515
Vvi4g1211 493 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 433 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1211 Vvi-Chr4 19011949 19023037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1211 205 354 Miscellaneous Gene Families AT5G08390 28.667 4.25e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1211 K14791 - vvi:100257466 931.013