Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1210 ATGGGTACCGTCTCTCGCTCCGCTCTCCTGTTTCTCATTCCCACACTACTATTCTCTGCGGCCGTCTCCGACATATCTTCCGATGAATCCGATGACCTATTGATCCGCCAAGTTGTGCCGGAGGGGGACGATCTATTGAGCGCTGAACACCAGTTTGGCTTATTCAAGGCTAAGTTCGGCAAAACCTACTCCACTGTCGAGGAGCACGACTACCGCTTCAGCGTCTTCGAGGCTAACTTGCGTCGCGCTAGAAGGCACCAGTTGCTCGATCCTTCTGCTGTACACGGCGTCACTCGGTTCTCCGATTTAACTCCTGACGAGTTTCGCCGGGATTATCTCGGATTAAAGCCGCTCCGGCTCCCAGCCGATGCACAAAAGGCTCCGATCCTCCCGACCAACGATCTTCCTACCGATTTTGACTGGAGAGATCATGGTGCCGTAACCCCAGTTAAAGATCAAGGTTCCTGTGGATCATGCTGGTCCTTCAGTGCAATTGGAGCCTTGGAAGGAGCTCATTTTCTTACGACTGGAAATCTTATTAGCATGAGTGAGCAACAGCTTGTGGATTGTGACCATGAGTGTGATCCAGAAGAATATGGTGCTTGTGACCAAGGGTGCAATGGGGGGTTGATGACAAGTGCTTTTGAGTACATACTAAAAGCTGGGGGAGTTGAGCGAGAAGAGACTTATCCTTATATTGGATCTGATCGTGGTTCTTGCAAATTTAACAAAAGCCAAATTGTTGCATCAGTATCGAACTTCAGTGTTGTTTCACTTGATGAAGATCAAATTGCTGCAAATATGGTGAAGAATGGCCCTCTTGCAGTGGGTATCAACGCAGTTTTCATGCAAACATACATGAAGGGAGTTTCATGCCCATACATTTGCTCAAGAAATTTGGATCATGGAGTGGTTCTAGTTGGATATGGTTCTGCTGGTTATGCCCCTATCCGGTTCAAGGAAAAGCCTTACTGGATCATAAAGAACTCTTGGGGAGAAAGCTGGGGAGAAGATGGGTATTACAAGATCTGCAGAGGTCATAACGCATGTGGAGTGGATTCCATGGTCTCAACTGTAGCAGCTATCCAGACCACCACCCAATAG 1104 0.481 MGTVSRSALLFLIPTLLFSAAVSDISSDESDDLLIRQVVPEGDDLLSAEHQFGLFKAKFGKTYSTVEEHDYRFSVFEANLRRARRHQLLDPSAVHGVTRFSDLTPDEFRRDYLGLKPLRLPADAQKAPILPTNDLPTDFDWRDHGAVTPVKDQGSCGSCWSFSAIGALEGAHFLTTGNLISMSEQQLVDCDHECDPEEYGACDQGCNGGLMTSAFEYILKAGGVEREETYPYIGSDRGSCKFNKSQIVASVSNFSVVSLDEDQIAANMVKNGPLAVGINAVFMQTYMKGVSCPYICSRNLDHGVVLVGYGSAGYAPIRFKEKPYWIIKNSWGESWGEDGYYKICRGHNACGVDSMVSTVAAIQTTTQ* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1210 367 CDD Peptidase_C1A 136 359 IPR039417 -
Vvi4g1210 367 SUPERFAMILY Cysteine proteinases 49 360 IPR038765 -
Vvi4g1210 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
Vvi4g1210 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 300 310 IPR025660 -
Vvi4g1210 367 Pfam Papain family cysteine protease 135 358 IPR000668 GO:0006508|GO:0008234
Vvi4g1210 367 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Vvi4g1210 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 324 343 IPR025661 -
Vvi4g1210 367 PRINTS Papain cysteine protease (C1) family signature 302 312 IPR000668 GO:0006508|GO:0008234
Vvi4g1210 367 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Vvi4g1210 367 PRINTS Papain cysteine protease (C1) family signature 324 330 IPR000668 GO:0006508|GO:0008234
Vvi4g1210 367 FunFam Cysteine protease RD19A 33 360 - -
Vvi4g1210 367 SMART pept_c1 135 360 IPR000668 GO:0006508|GO:0008234
Vvi4g1210 367 Gene3D Cysteine proteinases 29 360 - -
Vvi4g1210 367 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 49 352 IPR013128 GO:0008234
Vvi4g1210 367 SMART Inhibitor_I29_2 52 108 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1210 Vvi-Chr4 19007346 19009846 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1210 K01373 - vvi:100233020 743.036