Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1209 ATGTCATCAGAGCTTGGAACCTCCGAAAACCCTAGAAAATGGCGGTTCACTTGGGAAGCTCAATCTCACATCCCAACCCTCCGATTGTTTCTCTTCGATCAGGGCACCAAACCCTGCATTCAATGCAAAAATCTGAAAGTCGATTTGAATTTCGAACGGTCATTACTTTTAGTGAGCTGGTTCGAAGAAGAAACAGAAATCTCATTTAGGGTGCCGGTTCCAAGGGTTTTGGTTGACATTGAATCACCGATTAGTTTTAGAGCCATGGAGGATCACATTGAGGTTAAGCTCGTCCTGCTTCTTCCTGTCGATCACCACATTGTTTCGAACTTTAATTCCATATTGAATATGTCGGAAGCTACCTCGCAGCTGTTTTCTATGGATTCTGATATAAAGAGTCTATCTTCCAGAGGAGGAGTGCACTTCTACTGCAAAAGTTGCTCAACTAATTTAACTAAAAAGCCTCTCAGTTCTTTTGCTGAGATGCCATCAATCAATTGGCGAGAGGTTGCTGACAACTGGTTTGGTGCTTGTTGCTGTTCATTTGGAGGCATAAGTGAGAAGCTGGTAGCTAGATATGCAAATTCCTATTCATGTGGAGAGGAATCATGCCTATTAGACGCTACATCTGTTATTCTTTGCAAGGATGACCTTGTGGGATTTGAGTTTCCAGACAGGGATGGTGACCAAAACTATGAATCTGAACCTGATTGCACTGAAGATGACTGTATAAATGAAGATATGCAAGATGCTGGAGGCAATCATGGAAGATGTGTGTGCCCAACAGTTAAAAAAGAGAAAATGTCTGATCTCAGTGGAAAATTAAACTCCTTGCATATTCAGAAGGAACCCTTTGTTGATAGCCCAGGATACAAAATTATTGAAAAGGAAATTACTGTTCCCAGTTTGGTTGGCACGGTTCCAGTATCATATTTTTCTGAAAATGTAGCATCAGCACCTGGATGTTGTGCTGATAACAGAATTCATGTTCTGAATCATGATAAGGAAGTTTGCACTCCTGACACTGTATCATATTTTTCTGAAAATGTACCATCAGCACCTGGATGCTGTGCTGATAACAGAATTCATGTTCTGAATCATGATAAGGAAGTTTGCATGCCTGACACATCCGAAATCTCAAAGGAACAGAAGGTTACAAAAGCTAGTGAAGTCCTGGCAAATAAGAAGTCTTTCCTTAATGGCTTTCTTGGAAACATTTTCATGGCTAGATCCTACAATCTTTCAAAAGATGTTGAGTGGATTAAATTTGCATGCCCCCAGTGTTCATCTCTTCTGGGAGCATACCCTTGTGCTGATGGTTATGCACCCTTAGATGGTGGAGTTCGATTGTTTAAATGTTACATCTCCACTTGCTTGCCAGTCTGTGAATCAGGTGACCTTTTTAGGAAGTATACCCTGGAAAGAATGTTCACAAGTCAGCTGTTGGAAAGTGCAAAGGATGAATTATCATTTAGGACTGTGGTTAGAGATTTGAGAACCAAATCTCCAGTGCTTCAAATTGTTCTTTTAAATCCAAATTCCTGGTGCTGTACTGGCTATTGTTTGGGAACAGAGGACACAGTGGATCCAGTTGCAAACATAAATCTGTACCCCGCCATCAAAGTTCTTTTTTCGGACTGCAGTTACAGAACTGAATCTCAAATAAGGATGATAGAAGAATGGGTAACAAAAAATCAAGCTGATGAAGTCTACATGTTGGACCATCTAATAAGTGAATTAATTGTATCCTTGGAGGCAGCAATGGATATGTATCCACCTTCATACACCTTCCTACAAGGTTTGCCTTTATCATCCTTGCCGAGGTAA 1827 0.4067 MSSELGTSENPRKWRFTWEAQSHIPTLRLFLFDQGTKPCIQCKNLKVDLNFERSLLLVSWFEEETEISFRVPVPRVLVDIESPISFRAMEDHIEVKLVLLLPVDHHIVSNFNSILNMSEATSQLFSMDSDIKSLSSRGGVHFYCKSCSTNLTKKPLSSFAEMPSINWREVADNWFGACCCSFGGISEKLVARYANSYSCGEESCLLDATSVILCKDDLVGFEFPDRDGDQNYESEPDCTEDDCINEDMQDAGGNHGRCVCPTVKKEKMSDLSGKLNSLHIQKEPFVDSPGYKIIEKEITVPSLVGTVPVSYFSENVASAPGCCADNRIHVLNHDKEVCTPDTVSYFSENVPSAPGCCADNRIHVLNHDKEVCMPDTSEISKEQKVTKASEVLANKKSFLNGFLGNIFMARSYNLSKDVEWIKFACPQCSSLLGAYPCADGYAPLDGGVRLFKCYISTCLPVCESGDLFRKYTLERMFTSQLLESAKDELSFRTVVRDLRTKSPVLQIVLLNPNSWCCTGYCLGTEDTVDPVANINLYPAIKVLFSDCSYRTESQIRMIEEWVTKNQADEVYMLDHLISELIVSLEAAMDMYPPSYTFLQGLPLSSLPR* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1209 608 Pfam HECT-like Ubiquitin-conjugating enzyme (E2)-binding 96 224 IPR019193 -
Vvi4g1209 608 Pfam HECT-like Ubiquitin-conjugating enzyme (E2)-binding 413 598 IPR019193 -
Vvi4g1209 608 PANTHER E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER 8 606 IPR019193 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1209 - - vvi:100260906 1254.58