Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1205 ATGGTCTATGTATCTACAGAAGTTGACCACTCTGTGTGTGAGAGGGAGAATAGAATTGGTTCTTTGAAGAAGAAAGCAAATAATGCCTCCAGCAAGTTCAGACATTCATTGACAAAAAGGGGTAGGAGAAGTGGTAAAGTTATGTCTGTTGACATCGAGGATGTGCATGATGCTGAGGAGTTGCAGGCTGTCGATGCACTCCGTCAAGCACTTATATCGGAAGACCGTTTACCCTCAAGACATGATGATTATCATATGCTGCTCAGATTTTTGAAGGCGAGGAAATTTGATCTTGAGAAAACAAAACAAATGTGGATTGATATGCTTCAATGGAGGAAGGACTTCGGTGCTGACACAATTATGGAGGACTTCGAATTCAAGGAGCTCAACGAAGTCATTGAACATTATCCTCAAGGTCATCACGGAGTCGACAAGGAAGGCCGACCTGTTTATATTGAGAGATTAGGGAAAGTGGATGCTAACAAGCTGATGCAAGCCACAACAATGGACCGCTATGTAAAATACCATGTACAGGAGTTTGAGAGGACTTTTGTAATCAAGTTTCCATCTTGTTCGATTTCAGCGAGGAAGCAAATTGATCAAAGTACAACCATCCTAGATGTCCAAGGAGTGGGACTTAAGCATTTCACCAAATCTGCAAGGGAGCTTATCGTAAACCTTCAAAAGGTTGATGGTGACAATTACCCTGAGACACTGAATCGCATGTTTATCATCAATGCGGGTTCTGGATTTAGGCTATTGTGGAACACTGTTAAATCTTTTCTTGATCCCAAAACCACATCAAAGATCCATATGGTTCAAAATGGTTATGCCATATGTAGAACGAAATGTGAGAGTCAATCCACTGCTGAAAAGACCATCTCTGAGGATGAGATTGTTTACCCCAAGGTTTCTCGAGAGGTAGAAGACATTCAATCACTCTCCCCTGAAGTTCCTAGGAGCTACATCGAGCATCCGAATCTCTCTCCTGTACACGAAGAAGTCAGGATTAATCAAAATTTCCATAAATCTTACAATTATGAAGATTTCATCCCAATTATTGATAAGAGCATGAACGCACCTTGGCAGAATGTCATGGAGAATGACAGATATGCTCTCTCCAAAGCAGCGGATTGTTTCACCATACATGATGCTTACAAGGCTCCTGACGGTTTTAGCACTCAGATCTTCACTGGTGTCATGGCCTTGGTTATGGGCATTGTGACCATGATCAGACTGACACGAACAATGCCCAAGAAGTTCACTGATGCCAACCTCTATCCAGGTCCAATCTACTGTGTTGATGCAATGATTAAAAGCCACCCATATGCACACCAGCTATCTGCCCCTGTCATTACCGGCACAGAGTTCTTGGCCTTCATGAAACGCATGGCTGAGATGGAAGATAGAGTGAGTGTTCTCAGTGTCAAACCTACGGCCATGCCAGCTGACAAGGAGGATTTGCTGAATGCTGCTCTTATCCGGATCGACACCTTGGAGCGAGAACTTGCAGCAACCAAGAAGACTCTGGAGGAAGCCATGGCCCAACAGGAGGAGGTCCTGGCCTATATTGAGAAGAAGAAGAAGAAGAAGAAATTGGTATTCTATTAA 1611 0.4333 MVYVSTEVDHSVCERENRIGSLKKKANNASSKFRHSLTKRGRRSGKVMSVDIEDVHDAEELQAVDALRQALISEDRLPSRHDDYHMLLRFLKARKFDLEKTKQMWIDMLQWRKDFGADTIMEDFEFKELNEVIEHYPQGHHGVDKEGRPVYIERLGKVDANKLMQATTMDRYVKYHVQEFERTFVIKFPSCSISARKQIDQSTTILDVQGVGLKHFTKSARELIVNLQKVDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTSKIHMVQNGYAICRTKCESQSTAEKTISEDEIVYPKVSREVEDIQSLSPEVPRSYIEHPNLSPVHEEVRINQNFHKSYNYEDFIPIIDKSMNAPWQNVMENDRYALSKAADCFTIHDAYKAPDGFSTQIFTGVMALVMGIVTMIRLTRTMPKKFTDANLYPGPIYCVDAMIKSHPYAHQLSAPVITGTEFLAFMKRMAEMEDRVSVLSVKPTAMPADKEDLLNAALIRIDTLERELAATKKTLEEAMAQQEEVLAYIEKKKKKKKLVFY* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1205 536 Pfam CRAL/TRIO, N-terminal domain 80 107 IPR011074 -
Vvi4g1205 536 SMART sec14_4 128 298 IPR001251 -
Vvi4g1205 536 SUPERFAMILY CRAL/TRIO domain 128 275 IPR036865 -
Vvi4g1205 536 SUPERFAMILY CRAL/TRIO N-terminal domain 57 124 IPR036273 -
Vvi4g1205 536 Gene3D - 52 115 - -
Vvi4g1205 536 Pfam CRAL/TRIO domain 134 275 IPR001251 -
Vvi4g1205 536 CDD SEC14 129 273 IPR001251 -
Vvi4g1205 536 Coils Coil 489 527 - -
Vvi4g1205 536 Gene3D - 116 300 IPR036865 -
Vvi4g1205 536 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 128 303 IPR001251 -
Vvi4g1205 536 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 13 528 - -
Vvi4g1205 536 SMART CRAL_TRIO_N_2 83 108 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1205 Vvi-Chr4 18957444 18961809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1205 87 273 Acyl Lipid Metabolism Gene Families AT5G47730 29.630 5.85e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1205 - - vvi:100250656 1002.66