Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1203 ATGGTGGATGCTGTTGTTACTGTGTTCCTAGAGAAACTGCTCAATGCTCTTGAAGAGGAGGGCCGCGTTCTGTTCGATTTCAGAGAGCAGTTTGAAAGATTACGAGATGAGCTGCGGCTCATGCAAAGCTTCCTCAAAGATGCAGAGAGGCTGAAAAGGAAAAACGAGACTCTTCGGACGGTGATGATTGGTTTGCGGGAGCTGATCTATGAAGCTGAAGATATACTTGCGGATTGCAAAGTTCAATCGGAGGGGAGCCAAGACATCTCCGGTTGGTATGCTGTGTGTTTCTATCCTACTAACCTTCCTTTCAAGTATCAAACTGGAAAGCGCCTCAGAGAAATCAACGAGAAGATCACTCGGATTAAACAAAATATCCCGTCTTTCCTTGGAGTGCCGATTCTAAGCCAAGCCGAGATTGCAGATTCACGGAACCTCCCAGTAGATAGATGGAGCTCTTCTGTGTTTGACCATTCCCAAGTGGTTGGGATAGAGGGTGACACAAGGAAGGTAAAGAACTGGCTGTTGGAAGCCAAGGATGGAATCCTAGCAATTGGAGTTGTGGGCATGGGTGGGGTTGGGAAGACTACTTTGGCTCAAGTGGTCTTCAATGACAGGGAAATGGAGGCTCGTTTTGAGAGGAGGATGTGGGTGTCTGTCACTGGGACACCTAATGAAAAACGGATTTTGAGAAGCATGTTGAGGAACTTGGGTGATATGAATGTGGGAGATGATTGTGGTGAGTTGTTGAGGAAAATAAATCAATACCTCTTGGGCAAGAGGTTTTTGCTTGTCATGGATGATGTGGGGGAAAACACAAATACTTGGTGGCGCAAAATCAGTGATGGATTGCCTAAAGGAAATGGGAGTAGTATTATTATCACTACAAGAACTAAGGAAGTCGCAACAATGATGGGAGTGGAGGAAGAGAGAACACATCGGCCCAAAGTCCTCAGTAAGGATGATAGTTGGTTGCTCTTCCGCAATGTAGCATTTGCTGCAAATGGAGGCATTTGTACTTCCTCTGAACTGGAGAACATTGGGAGGGAGATTGTACATAAATGTGGGGGCCTCCCATTAGCAATTAAGGCAGCTGGAGGAATGATGCTCTATCAACAACCTTATTATCATGACTGGAAGCGAATTGCAGACCATTTTCGGGATGAATTGGCAGAAGAGGATGGTTCTGTCATGGCTTCACTCGAATTAAGTTATGAGGAACTCCCATCTCACCTCAAGTCATGCTTCCTCTGTTTGTCTCTTTATCCAGAGGACTGCGAAATAACCAAAGAGCAATTGATTCATTGGTGGATTGCAGAGGGTTTTGTCCCACTGAGAAGAGGCAGATTATCAACTGAAGCTGGGGAGGATTGTTTCTCAGGGTTAACAAATCGTTGTTTGATAGAAGTCGTTGAAAAGAGTTATACTGGAGCAATACAAACCTGCAAAATTCATGATATGGTTCGGGATTTAGTGATCAAGAAGGCGGAAGATGATGCGTTCTCTGGACCAACAACTGCAAGTTGTCGCCATTTGGGTATTGAAGGTGATATCGACAGAAAGTACGATATGCCAAATCAGAAGCTGCGTGCATTATTGTCCACAATCAAGACTGGAGAAGTGAACAAGGTTGCTTCAAGCAATGCAAAAAAGTTCTGTGATTGCCGATACCTGCGGGTGTTAGATATCTCCAAAACGATCTTTGATAAGTCTCTCACAGGTTTATTGGATCATATTGGATTCCTCCAACACTTAACTTATCTCAGCTTAAGCAACACACATCCATTGACTGAAGTTCCACCTGCACTAGAGGAGCTCCGCAACCTTCAGGTATTGGATTTAAGTTACTGTCAGAATTTGAAAATGCTCCCCTCTTATGTTACAACTTTTGAGAAGCTCACAGTGTTAGATGTGAGTCATTGTGGTTCACTTCGATACCTTCCCAAAGGCCTGGGGAGCCTTTCAAATCTTCAAATATTATTGGGGTTTAAACCTGCAAAATCAAATCAATTAGAAGGTTGTCGGATTGCTGAGTTAAGAAGCTTGACTAAGCTTAGGAGACTTGGCTTACAACTAACTCAGGGTGATGAGATTGGAGACAATGACGACAATGTATTGGTAGGTCTCCGAGGACTTCAATTTCTGGTAATTAGTTGTTTTGACAGTCACGGTGATGACCTGATACCCAAACTGGATAAACTCTCTCCTCCCCAACAGCTCCATGAGCTCTCTCTCAGATTTTATCCAGGAAAGATGAACCCAGGCTGGCTAAACCCTTTTTCACTTCCTATCTTAAGGTATCTTTCAATCTCTTCAGGAAACCTTACAAACATGAGCCAACGTTTCTGGGGTGATGGTGACAATACCTGGAAAATTGAGGGCTTAATGTTGGAATCACTATCCGATTTGGGAATGGAATGGTCTATGGTGCAACAAGTGATGCCAAGACTGAGAATTGTGAATGTTAGTTGGTGTCCAGATTTGGACTCATTTCCAATTGAAGATGTTGGATTCAGAGGGGGAGTGTGGAAGAAGGGAGAGCGCCCAAGCTAG 2553 0.4403 MVDAVVTVFLEKLLNALEEEGRVLFDFREQFERLRDELRLMQSFLKDAERLKRKNETLRTVMIGLRELIYEAEDILADCKVQSEGSQDISGWYAVCFYPTNLPFKYQTGKRLREINEKITRIKQNIPSFLGVPILSQAEIADSRNLPVDRWSSSVFDHSQVVGIEGDTRKVKNWLLEAKDGILAIGVVGMGGVGKTTLAQVVFNDREMEARFERRMWVSVTGTPNEKRILRSMLRNLGDMNVGDDCGELLRKINQYLLGKRFLLVMDDVGENTNTWWRKISDGLPKGNGSSIIITTRTKEVATMMGVEEERTHRPKVLSKDDSWLLFRNVAFAANGGICTSSELENIGREIVHKCGGLPLAIKAAGGMMLYQQPYYHDWKRIADHFRDELAEEDGSVMASLELSYEELPSHLKSCFLCLSLYPEDCEITKEQLIHWWIAEGFVPLRRGRLSTEAGEDCFSGLTNRCLIEVVEKSYTGAIQTCKIHDMVRDLVIKKAEDDAFSGPTTASCRHLGIEGDIDRKYDMPNQKLRALLSTIKTGEVNKVASSNAKKFCDCRYLRVLDISKTIFDKSLTGLLDHIGFLQHLTYLSLSNTHPLTEVPPALEELRNLQVLDLSYCQNLKMLPSYVTTFEKLTVLDVSHCGSLRYLPKGLGSLSNLQILLGFKPAKSNQLEGCRIAELRSLTKLRRLGLQLTQGDEIGDNDDNVLVGLRGLQFLVISCFDSHGDDLIPKLDKLSPPQQLHELSLRFYPGKMNPGWLNPFSLPILRYLSISSGNLTNMSQRFWGDGDNTWKIEGLMLESLSDLGMEWSMVQQVMPRLRIVNVSWCPDLDSFPIEDVGFRGGVWKKGERPS* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1203 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 419 IPR027417 -
Vvi4g1203 850 Gene3D - 152 313 IPR027417 -
Vvi4g1203 850 SUPERFAMILY L domain-like 484 832 - -
Vvi4g1203 850 FunFam Probable disease resistance protein At1g61300 146 310 - -
Vvi4g1203 850 CDD RX-CC_like 3 123 IPR038005 -
Vvi4g1203 850 FunFam Probable disease resistance protein At1g63360 405 494 - -
Vvi4g1203 850 PANTHER DISEASE RESISTANCE PROTEIN RP 33 821 IPR044974 GO:0006952
Vvi4g1203 850 Coils Coil 34 61 - -
Vvi4g1203 850 Gene3D Ribonuclease Inhibitor 526 838 IPR032675 -
Vvi4g1203 850 Gene3D - 317 404 IPR042197 -
Vvi4g1203 850 Gene3D - 5 126 - -
Vvi4g1203 850 PRINTS Disease resistance protein signature 256 270 - -
Vvi4g1203 850 PRINTS Disease resistance protein signature 355 369 - -
Vvi4g1203 850 PRINTS Disease resistance protein signature 184 199 - -
Vvi4g1203 850 PRINTS Disease resistance protein signature 604 620 - -
Vvi4g1203 850 Gene3D - 405 496 IPR036388 -
Vvi4g1203 850 Pfam Rx N-terminal domain 5 87 IPR041118 -
Vvi4g1203 850 Pfam NB-ARC domain 165 406 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1203 Vvi-Chr4 18940831 18943383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1203 557 657 Receptor kinase-like Gene Family AT4G13920 38.235 8.81e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1203 - - vvi:100245534 1705.26