Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1200 ATGAATAACGCAATCAACTTTTTCTCTGAAACCAAATTGGCCTCCGCCAAGACGGTGTTCTCCACCGCTGCCTCTCTCCTCGCCACCGCTATGGTGTTCCGAAGCGTCCTCCAAGATTTCTTGCCTTACGAAGCCCAGCAAATTTTTTGTTCTGGAATTCGACGCTTGTTCAATCGCTTCTCCCCACAGATGACCATGGTGATCGACGAGTTCGATGGCATCGCTTACAACCAAATCTTCGAGGCTGCCGAGACCTACTTGGGCAGCAAAGTCTGCTCCTCCCAGAGGCTGAGAGTGAGCAGGCCGGCCAAGGAGCGCAAATTCAACATCAACGTGGAGCGTGATCAAGAGATCGTCGACGTGTTTCGTGGTGTCAAATTCAGGTGGCTCTTGATATGTATTAAGACTGAGTCCAGGAGTATATACAATCCTCGCGATTTCAACTCCACAATTCGATCCGAAGTTCGATCTTTCGAGCTCAGTTTTCATAAGAAGCATTTGGATATGGTTCTCAATTCCTACTTTCCATACATATTGAAGGAATCAGTATCCTTGATACAAGAGAAGAAGACTTTGAAGCTCTTCACCGTCGATTTCGAAAAAATGTTTGGGAAGATGAGCGATGCCTGGTCATCAATCAGCCTTGATCATCCATCAACTTTTGATACGATCGCCATGGACTCGGAACTAAAGAGCAAAATTTTGGAAGATCTTAAAAGGTTTGTCAGGAGGAGGGATTATTACAAGAAGGTCGGGAAGGCTTGGAAGCGCGGATACTTGCTGTACGGACCTCCTGGTACGGGTAAATCGAGTTTGATCGCCGCCATAGCTAACTATTTGAACTTCGATATATATGATTTGGAGCTCACGGAACTCCGGTGCAACTCCGAGCTGAGGAGGTTGCTGCTTGCGACAGCCAATCGATCAATTCTGGTGGTGGAGGATATTGACTGTACGATTCAGTTGCAAGATCGTTCGGCAGAAAGCCAAGTCATGAATCCACGCTCATTTCAGTTCGAGAAACAGGTGACGCTTTCAGGATTGTTGAATTTTATCGATGGACTTTGGTCAAGCTGCGGTGACGAGCGAATCATAATATTCACAACAAACCACAAAGACAAGCTGGATCCTGCTTTGCTGCGTCCAGGGCGTATGGACATGCACATTCACATGTCATATTGCACTCCATATGGGTTCAAAATTTTAGCTGCCAACTACCTTGGAATAATAAACCATTACCTATTCAGTTACATTGAAAATCTCATTCAAACTACTGAAGTCACCCCAGCTGAAGTGGCCGAGCATCTACTCCAAAGTGATGAGCCTGAAAAGGCACTCAGAGATTTGATTAAATTCCTCGAAGTGAAGAAGGAAGAGGCTAGGGTTCAAAAAGAAAAAGAAGAACTAGAAGAAGAAGAAGAGGAAGAAGAGGAAGAAGAGGAGGAAGAAGAAGCCAAGCCAGAAAAAGAACTGGAATTGCAGCAAGGTGGTAGTGTTGGAGAAAATGACGAGGTGATGATGATGAATAAACGAATGCCACAGCTGGGCTTTACACTTGGAGATGGATAG 1569 0.4538 MNNAINFFSETKLASAKTVFSTAASLLATAMVFRSVLQDFLPYEAQQIFCSGIRRLFNRFSPQMTMVIDEFDGIAYNQIFEAAETYLGSKVCSSQRLRVSRPAKERKFNINVERDQEIVDVFRGVKFRWLLICIKTESRSIYNPRDFNSTIRSEVRSFELSFHKKHLDMVLNSYFPYILKESVSLIQEKKTLKLFTVDFEKMFGKMSDAWSSISLDHPSTFDTIAMDSELKSKILEDLKRFVRRRDYYKKVGKAWKRGYLLYGPPGTGKSSLIAAIANYLNFDIYDLELTELRCNSELRRLLLATANRSILVVEDIDCTIQLQDRSAESQVMNPRSFQFEKQVTLSGLLNFIDGLWSSCGDERIIIFTTNHKDKLDPALLRPGRMDMHIHMSYCTPYGFKILAANYLGIINHYLFSYIENLIQTTEVTPAEVAEHLLQSDEPEKALRDLIKFLEVKKEEARVQKEKEELEEEEEEEEEEEEEEEAKPEKELELQQGGSVGENDEVMMMNKRMPQLGFTLGDG* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1200 522 SMART AAA_5 255 395 IPR003593 GO:0016887
Vvi4g1200 522 Pfam ATPase family associated with various cellular activities (AAA) 260 392 IPR003959 GO:0005524|GO:0016887
Vvi4g1200 522 PANTHER BCS1 AAA-TYPE ATPASE 21 460 - -
Vvi4g1200 522 Pfam Domain associated at C-terminal with AAA 41 132 IPR025753 -
Vvi4g1200 522 Gene3D - 211 389 IPR027417 -
Vvi4g1200 522 Gene3D - 390 457 - -
Vvi4g1200 522 MobiDBLite consensus disorder prediction 461 522 - -
Vvi4g1200 522 FunFam AAA-ATPase ASD, mitochondrial 211 389 - -
Vvi4g1200 522 CDD RecA-like_BCS1 234 391 - -
Vvi4g1200 522 MobiDBLite consensus disorder prediction 468 487 - -
Vvi4g1200 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 438 IPR027417 -
Vvi4g1200 522 ProSitePatterns AAA-protein family signature. 363 381 IPR003960 GO:0005524|GO:0016887
Vvi4g1200 522 Coils Coil 443 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1200 Vvi-Chr4 18902110 18904497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1200 220 474 Miscellaneous Gene Families AT5G58870 28.114 1.74e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1200 - K08900 vvi:100241950 963.37