Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1198 ATGGCAAATCCAGATGGCGCTCCCCGAGTTTTCTGCATTGGAACTGCCGACACGAAGCTGGAGGAGATCCGATTCTTGGCCGAGTCTGTTCGATCCAATTTGAACAATTTCTCCAACACTTCTTCTACTACCAAGGTACAAGTGACAGTTGTTGATGTATCTACCCACCAAAACGAGATTGACAGTGTGGGGGATTTTATATTTGTACCCAGAAAGGATATCCTCTCTTGCTATTTTGGGTCTATGGAACAAACACCTGGCCCACTGCCAGAGGACAGAGGCAAAGCTGTTGGCATAATGAGTAAAGCACTTGAACATTACCTTAAGAAAGCTCAGGAGGATCATGTTCTTGCTGGAGCAATTGGTATTGGAGGAAGTGGAGGCACATCTATTATATCATCTGCTTTTAAATCTGTTCCCATTGGAATGCCTAAGATTATTGTATCAACTGTAGCTAGTGGTCAAACTGAACCTTATGTTGGCACCTCAGATTTAATATTATTTCCATCAGTAGTGGATGTATGTGGGATTAACAATGTAAGTAGGGTTGTTTTATCAAATGCTGGTGCTGCTTTTGCTGGAATGGTGATTGGAAGGCTCCAGGCATCCAGAGATTCTTTAAGTAGTAATGAAAAGTTTACTGTTGGCGTAACCATGTTTGGAGTCACAACTCCATGTGTAAATGCTGTCAAAGAAAGATTGGTTAAAGAAGGATATGAGACTCTGGTTTTCCATGCCACTGGAACAGGTGGAAGGGCTATGGAGGATCTTGTCAGAGGGGGATTTATACAGGGTGTTTTGGACATCACAACAACAGAGGTTGCGGATTATGTAGTTGGAGGTGTCATGGCTTGTGACAGTTCCCGCTTTGATGCCATGATAGAGAAGAAGATCCCTTTAGTTGTGAGTGTGGGAGCATTGGATATGGTGAATTTTGGAGCCAAGACTACCATACCTTCTCATTTACTGAAAAGAAATATTCATGTACATAATGAGCAGGTATCTCTTGTTCGAACTACGGTAGATGAAAACAAGAAATTTGCTGGCTTTATAGCAAACAAACTGAACAAAGCATCATCAAAGGTTCGTGTTTGCCTTCCACAGAAAGGTATCTCTGCTTTGGATGCACCAGGGAAGCCCTTTTATGATCCTGAGGCTACCGTTACTCTAATAAAGGAACTACAGAAGCTTATTCAGACAAATGAAGATCGACAGGTAGAGGTGTATCCTTACCATATTAATGACCCCGAGTTTGCGAACACATTGGTTGATTCATTTCTGGAGATCAGAAAAAGGCATTCCGAAGATGCTGATCCTCGTAAAATTGCTGCTTTTGTACCCAATCAAGACCTTCATGAAGATTCTATTTCTAAACCGAATTTGTTGGGCAATGAAACAATTTGTTACAGCCCAAGTGACTTTCCTGATGCAAGGCCAGAGACCTTGCAAAGAACTAGGTCAATAATACAGCGTCTGAAAGATCAAATAAGTAAAGGGAAACCCATAATAGGAGCTGGTGCAGGAACAGGCATATCTGCAAAGTTTGAGGAAGCTGGTGGTGTGGACTTGATAATTATTTACAACTCGGGCCGCTTTCGGATGGCAGGAAGGGGTTCCTTAGCAGGACTGTTACCTTTTGCTGATGCAAATGCAGTGGTAGTTGACATGGCCAGTGAAGTGTTGCCTGTGGTTAAAGAAGTACCAGTTCTTGCTGGAGTATGTGGAACTGATCCTTTCCGCCGAATGGATTCCTTTTTAAAGCAGTTGGAATTGATTGGATTTGTTGGTGTGCAAAACTTTCCAACTGTTGGACTTATTGATGGTAATTTTAGACAAAATCTGGAAGAGACGGGAATGGGATATGGCTTGGAGGTGCAGATGATTGGAAAGGCACATAAAATGGGTCTCTTGACAACTCCATATGCTTTCAACCGAGATGAAGCTGTGGGAATGGCAAAAGCTGGTGCCGACATTATTGTGGCCCATATGGGACTCACAACATCTGGATCTATTGGTGCAAAAACATCTGTTTCAATTGAGGATAGTGTTGTTCGTGTGCAAGCTATTGCAGATGCTGCACATAGTATTAATCCTGAGGTTATTGTGCTCTGCCATGGAGGTCCTATTTCTGGTCCCCAAGAGGCAGAATTCGTATTAAAGAGGACCAAGGGAGTTCATGGATTCTATGGCGCATCAAGCATGGAGAGGTTACCAGTTGAACGAGCTATAACAAGCACAGTCCAACAATACAAATCAATTCGCATAAAGTGA 2271 0.4262 MANPDGAPRVFCIGTADTKLEEIRFLAESVRSNLNNFSNTSSTTKVQVTVVDVSTHQNEIDSVGDFIFVPRKDILSCYFGSMEQTPGPLPEDRGKAVGIMSKALEHYLKKAQEDHVLAGAIGIGGSGGTSIISSAFKSVPIGMPKIIVSTVASGQTEPYVGTSDLILFPSVVDVCGINNVSRVVLSNAGAAFAGMVIGRLQASRDSLSSNEKFTVGVTMFGVTTPCVNAVKERLVKEGYETLVFHATGTGGRAMEDLVRGGFIQGVLDITTTEVADYVVGGVMACDSSRFDAMIEKKIPLVVSVGALDMVNFGAKTTIPSHLLKRNIHVHNEQVSLVRTTVDENKKFAGFIANKLNKASSKVRVCLPQKGISALDAPGKPFYDPEATVTLIKELQKLIQTNEDRQVEVYPYHINDPEFANTLVDSFLEIRKRHSEDADPRKIAAFVPNQDLHEDSISKPNLLGNETICYSPSDFPDARPETLQRTRSIIQRLKDQISKGKPIIGAGAGTGISAKFEEAGGVDLIIIYNSGRFRMAGRGSLAGLLPFADANAVVVDMASEVLPVVKEVPVLAGVCGTDPFRRMDSFLKQLELIGFVGVQNFPTVGLIDGNFRQNLEETGMGYGLEVQMIGKAHKMGLLTTPYAFNRDEAVGMAKAGADIIVAHMGLTTSGSIGAKTSVSIEDSVVRVQAIADAAHSINPEVIVLCHGGPISGPQEAEFVLKRTKGVHGFYGASSMERLPVERAITSTVQQYKSIRIK* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1198 756 CDD Tm-1-like 9 429 IPR044122 -
Vvi4g1198 756 Pfam Phosphoenolpyruvate hydrolase-like 488 753 IPR009215 -
Vvi4g1198 756 Gene3D Uncharacterised protein family UPF0261, NN domain 2 202 - -
Vvi4g1198 756 Pfam Uncharacterised protein family (UPF0261) 8 429 IPR044122 -
Vvi4g1198 756 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 486 675 IPR015813 GO:0003824
Vvi4g1198 756 Gene3D Uncharacterised protein family UPF0261, NC domain 212 432 - -
Vvi4g1198 756 Gene3D Aldolase class I 480 731 IPR013785 -
Vvi4g1198 756 PANTHER UPF0261 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_1G10120) 7 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1198 Vvi-Chr4 18877642 18887402 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1198 - - vri:117912835 1397.1