Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1195 ATGGAACAAACACCTGGCCCACTGCCAGAGGACAGAGGCAAAGCTGTTGGCATAATGAGTAAAGCACTTGAACATTACCTTAAGAAAGCTCAGGAGGATCATGTTCTTGCTGGAGCAATTGGTATTGGAGGAAGTGGAGGCACATCTATTATATCATCTGCTTTTAAATCTGTTCCCATTGGAATGCCTAAGATTATTGTATCAACTGTAGCTAGTGGTCAAACTGAACCTTATGTTGGCACCTCAGATTTAATATTATTTCCATCAGTAGTGGATGTATGTGGGATTAACAATGTAAGTAGGGTTGTTTTATCAAATGCTGGTGCTGCTTTTGCTGGAATGGTGATTGGAAGGCTCCAGGCGTCCAGAGATTCTTTAAGTAGTAATGAAAAGTTCACTGTTGGCGTAACCATGTTTGGAGTTACAACTCCATGTGTAAATGCTGTCAAAGAAAGATTGGTTAAAGAAGGATATGAGACTCTGGTTTTCCATGCCACTGGAACAGGTGGAAGGGCTATGGAGGATCTTGTCAGAGGGGGATTTATACAGTCCCGCTTTGACGCCATGATAGAGAAGAAGATCCCTTTAGTTATGAGTGTGGGAGCATTGGATATGGTGAATTTTGGAGCCAAGACTACCATACCTTCTCATTTACTGAAAAGAAATACCCATGTACATAATGAGCAGGTATCTCTTGTTCGAACTACGGTAGATGAAAACAAGAAATTTGCTGGCTTTATAGCAAACAAACTGAACAAAGCATCATAA 768 0.4089 MEQTPGPLPEDRGKAVGIMSKALEHYLKKAQEDHVLAGAIGIGGSGGTSIISSAFKSVPIGMPKIIVSTVASGQTEPYVGTSDLILFPSVVDVCGINNVSRVVLSNAGAAFAGMVIGRLQASRDSLSSNEKFTVGVTMFGVTTPCVNAVKERLVKEGYETLVFHATGTGGRAMEDLVRGGFIQSRFDAMIEKKIPLVMSVGALDMVNFGAKTTIPSHLLKRNTHVHNEQVSLVRTTVDENKKFAGFIANKLNKAS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1195 255 Gene3D Uncharacterised protein family UPF0261, NN domain 1 121 - -
Vvi4g1195 255 PANTHER UPF0261 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_1G10120) 7 254 - -
Vvi4g1195 255 Gene3D Uncharacterised protein family UPF0261, NC domain 186 255 - -
Vvi4g1195 255 Gene3D Uncharacterised protein family UPF0261, NC domain 131 185 - -
Vvi4g1195 255 Pfam Uncharacterised protein family (UPF0261) 184 254 IPR044122 -
Vvi4g1195 255 Pfam Uncharacterised protein family (UPF0261) 9 183 IPR044122 -
Vvi4g1195 255 CDD Tm-1-like 11 254 IPR044122 -
Vvi4g1195 255 SUPERFAMILY SIS domain 31 214 IPR046348 GO:0097367|GO:1901135
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1195 Vvi-Chr4 18846140 18848191 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1195 - - vri:117912835 449.129