Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1172 ATGTCCAACTTTGAACAAACATTTGGGGGTGTCCACTGTCCAGCGGCGGGTGGCTTTGCATGGCCGCTTTATCGATTAGAGCTCTTGGGAGGAGACTCTTCACAGCACCGGCAGTTGCTTCTACGGAATGCATCGACCTTCAGGTATTGGAGAGAAGCTTGTGCAGATTCGGGTGCTTTGAATTATGGGAGGGAAATTCATGCTCAGGCAATGAAGAAAGGCTTTGATGTCAGCTCCTTTGTGGCTAATACTCTTGCTACTATGTACAACAAATGTGGGAAATTAGAGTATGGTTTGACCTTGTTTGAAAAAATGAGTATGAGAGATGTGGTTTCGTGGACAACGATTATAACAACACTTGTCCAAATGGGCCAAGAAGAGTGTGCAGTTCAAGCATTCATACGAATGAGAGAATCAGATGTAAGTCCTAATGAATACACTTTTGCAGCTGTTATCTCTGGTTGTGCCAATCTTGCAAGAATTGAATGGGGAGAACAACTGCATGCACTCATCTTACATCTAGGTCTCGCTGCTTCTTTATCAGTGGAAAATTCAATCATGACCATGTATGCAAAATGTGGGCAGTTAACTTCATCTTCAGTGATATTCCATGAGATGACTAGAAGAGACATTGTTTCATGGAGCACCATAATTGCAGGGTATTCACAAGGAGGTCATGTCAGTGAAGCTTTTGAGCTTCTATCATGGATGAGAATGGAAGGGCCAAAACCCACTGAGTTTGCTCTTGCTAGTGTGCTGAGTGCATGTGGGAATATGGCAATTCTTGAGCATGGAAAGCAACTCCATGCTTATGTGCTGTCCATCGGTTTAGAACATACAGCTATGGTATTGAGTGCTTTAATCAATATGTATTGTAAATGTGGGAGTATAGAAGAAGCGTCAAGGATCTTTGATGCAGCTGAAAATGATGATATTGTGTCTTGGACAGCCATGATTAATGGATATGCTGAACATGGGTACAGCCGTGAAGTAATTGATTTGTTTGAAAAGATCCCCAGAGTTGGTTTGAGGCCAGACTCGGTGACCTTTATTGGTGTTCTTAGTGCCTGTAGTCATGCTGGACTTGTTGATCTCGGTTTTCGCTACTTTAATGCAATGAGTAAGAAGTACCAGATTAGTCCTTCAAAAGAACACTATGGCTGCATGATCGATCTACTCTGCCGAGCTGGAAGATTAAGTGATGCAGAGCATATGATTGAAGCTATGCCATTTCACCGTGATGATGTTGTTTGGTCAACTTTGCTGAGAGCATGTAGGGTCCACGGTGATGTTGAACGTGGAAGGCGAACTGCAGAAAGGATTCTTCAGTTGGAACCCAACTGTGCAGGAACCCATATTACCTTGGCTAATATTTATGCCTCAAAAGGAAAGTGGCGGGAAGCAGCAGATATTAGGAAGCTAATGAAATCAAAGGGGGTGATAAAGGAGCCTGGATGGTCTTGGATTAAGGTTAAGGATCTGGTCTTTGCATTTGTTGCTGGTGATCGATCTCATCCACAGGGTGAAGACATATATAACATGTTGGATTTACTAGCTTCAAGGACAGAGTTGGCTGATTGTGTCCAAGAAACAGGCTTCCTTCCATATGATCTTGAATATTAG 1623 0.4288 MSNFEQTFGGVHCPAAGGFAWPLYRLELLGGDSSQHRQLLLRNASTFRYWREACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLLASRTELADCVQETGFLPYDLEY* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1172 540 Gene3D Tetratricopeptide repeat domain 35 164 IPR011990 GO:0005515
Vvi4g1172 540 Gene3D Tetratricopeptide repeat domain 283 493 IPR011990 GO:0005515
Vvi4g1172 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Vvi4g1172 540 Pfam E motif 428 490 IPR046848 -
Vvi4g1172 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Vvi4g1172 540 NCBIfam pentatricopeptide repeat 111 145 IPR002885 -
Vvi4g1172 540 NCBIfam pentatricopeptide repeat 386 409 IPR002885 -
Vvi4g1172 540 NCBIfam pentatricopeptide repeat 212 245 IPR002885 -
Vvi4g1172 540 NCBIfam pentatricopeptide repeat 313 347 IPR002885 -
Vvi4g1172 540 NCBIfam pentatricopeptide repeat 285 312 IPR002885 -
Vvi4g1172 540 FunFam Pentatricopeptide repeat-containing protein 164 263 - -
Vvi4g1172 540 Gene3D Tetratricopeptide repeat domain 165 266 IPR011990 GO:0005515
Vvi4g1172 540 Pfam PPR repeat 385 409 IPR002885 -
Vvi4g1172 540 Pfam PPR repeat 285 305 IPR002885 -
Vvi4g1172 540 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 36 533 IPR046960 GO:0003723|GO:0009451
Vvi4g1172 540 SUPERFAMILY TPR-like 85 470 IPR011990 GO:0005515
Vvi4g1172 540 Pfam PPR repeat family 311 358 IPR002885 -
Vvi4g1172 540 Pfam PPR repeat family 108 157 IPR002885 -
Vvi4g1172 540 Pfam PPR repeat family 210 256 IPR002885 -
Vvi4g1172 540 FunFam Uncharacterized protein 35 163 - -
Vvi4g1172 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 143 IPR002885 -
Vvi4g1172 540 FunFam Pentatricopeptide (PPR) repeat-containing protein-like 281 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1172 Vvi-Chr4 18621614 18623814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1172 53 535 Glycoside Hydrolase AT3G49170 38.571 3.76e-121 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1172 - - vvi:100247943 981.089