Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1171 ATGAGGCATCTGAGTTGGGTTCTCTGTTTACTTCTTTTGATCCAACAGCAAGGTTTTCAGGTCCAAGTTGAAGCGGGAGATGGATTCATCAGAACAAGAGGAGTGCATTTTGTGATGAATGGTAGCCCTTACTATGCAAATGGCTTCAATGCCTACTGGCTGATGTATTTGGCTTCTGACCCATCTCAGCGTGCCAAAGTCTCAGCTGCTTTCCGTGAAGCTTCAAGCCATGGCCTCACTGTGGCAAGAACCTGGGCTTTCAGTGATGGTGGGTACAGGCCTCTTCAGTACTCTCCTGGCTTTTACAATCAGCAAATGTTCAAGGGATTAGATTTCGTTGTTGCTGAGGCCAGAAGGTACGGAATCAAGCTTATACTGAGCTTGGTGAATAACTATGAAAGCTTTGGTGGTAAAAAACAGTATGTGAACTGGGCTAGAAGTCGAGGACAGCACCTCTCATCTGAAGATGATTTCTTTAGAAACCCTGTTGTTAAAGGATACTACAAGAGCCATGTTAAAACTGTGCTTAACAGATACAACAGCTTTACTGGAGTTATTTACAAGAATGATCCAACTATTATGGCCTGGGAGCTTATGAATGAGCCTAGATGCACATCAGATCCATCAGGAAGGACCATTCAGGCTTGGATAATGGAGATGGCTTCTTTTGTGAAGTCAATAGACAGGAATCACTTGCTGGAAGCTGGTTTAGAAGGCTTCTATGGACAAACAACACCTTGGAGGACGAGACTCAATCCTGGATATTATATAGGAACAGACTTCATTGCAAATAATCGAATCCGTGGAATTGACTTTGCTACAGTTCATTCATATCCTGATCAATGGCTCTCAGGCTCGAATGAACAATCTCAACTTTCTTTCCTGAACAATTGGCTGGGTGCCCACATCCAAGATGCCCAAAACATTCTCCGAAAGCCAGTACTCCTCACAGAGTTTGGAAAATCATGGAAAGATCCTGGTTTCAGCACCTACCAGAGGGACCAGCTGTTCAACACTGTGTACAACCAGATATACTCATCAGCTAGACGTGGAGGTGCAGCTGCTGGTGGCCTCTTCTGGCAACTTCTAACAGAAGGCATGGACTCCTTCCGGGATGGGTATGACATAGTTCTAAGCGAGAGCCCTTCAACTGCAAATGTCATAGCTCAGCAGTCACGCAAGATTGATCAAATTCGGAAAATATTTGCAAGAATGAGAAATATGACGAAGTGGAAGAGTGCGAGGGCCAGTAGACGAGCTGAATGGCTGGCTAGAAACAGGAGCAAACGTATTGGGAACTGA 1302 0.4478 MRHLSWVLCLLLLIQQQGFQVQVEAGDGFIRTRGVHFVMNGSPYYANGFNAYWLMYLASDPSQRAKVSAAFREASSHGLTVARTWAFSDGGYRPLQYSPGFYNQQMFKGLDFVVAEARRYGIKLILSLVNNYESFGGKKQYVNWARSRGQHLSSEDDFFRNPVVKGYYKSHVKTVLNRYNSFTGVIYKNDPTIMAWELMNEPRCTSDPSGRTIQAWIMEMASFVKSIDRNHLLEAGLEGFYGQTTPWRTRLNPGYYIGTDFIANNRIRGIDFATVHSYPDQWLSGSNEQSQLSFLNNWLGAHIQDAQNILRKPVLLTEFGKSWKDPGFSTYQRDQLFNTVYNQIYSSARRGGAAAGGLFWQLLTEGMDSFRDGYDIVLSESPSTANVIAQQSRKIDQIRKIFARMRNMTKWKSARASRRAEWLARNRSKRIGN* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1171 433 SUPERFAMILY (Trans)glycosidases 29 388 IPR017853 -
Vvi4g1171 433 PANTHER - 3 424 IPR045053 GO:0004553
Vvi4g1171 433 FunFam Mannan endo-1,4-beta-mannosidase 6 26 399 - -
Vvi4g1171 433 Gene3D Glycosidases 25 399 - -
Vvi4g1171 433 Pfam Cellulase (glycosyl hydrolase family 5) 66 333 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1171 Vvi-Chr4 18617388 18619845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1171 1 416 Glycoside Hydrolase AT5G66460 69.139 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1171 K19355 - vvi:100259912 885.174