Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1170 ATGGCGCTGCCTCAAATGGAGGTTGTGGGTCTGCATACATCCATATCTCTTTATAGAGAAACATGGAGAAGTCATTATCTCCATCGCTTTCAGTTCACCACTCTAGGCAAGAAATCTTTTCTCCATGGTTGTTCCTTCCAATTTCGAGCTTGGAGCAGAAGTCGAGAGCTCGTCTCCCCTCGAACTAACCTCTCCATCATTCGACGGGTTAATGCCACTGAACGAGTCGAAGAAGAATTTGATGTTATCGACAACCCAGCAGCGGCGAGTACGATGAGCTCCTCCGAGGACGAGGAGTCATCAGCCTCAACTTTCCTATCTTTGAGCGAGAAGCCTGATAGGAACATGGCCCTCCTCGATGACTATGAGTTGGAGGAACTTGACTTTGCCTCCAACCCTAACCATCGCAGTGGATATGTGGCTGTGCTTGGCAAGCCCAATGTTGGAAAGAGTACCCTTGCAAACCAAATGATAGGCCAAAAGTTGTCAATTGTTACTGATAAACCTCAAACCACAAGGCATCGAATCCTTGGTATATGTTCTGGTCCAGAGTATCAGATGATACTTTATGACACACCTGGTGTTATTGAGAAGAAAATGCACAAGTTGGACTCCATGATGATGAAGAATGTCCGCAGTGCTACCATTAATGCGGACTGTGTAGTGGTTCTTGTTGATGCATGTAAGGAACCCCAAAAGATTGATGAAGTGTTGGAAGAAGGTGTGGGAAACCTCAAAGATAAACTACCCACTTTGCTAGTTTTGAATAAGAAAGATCTGATCAAACCTGGTGAAATTGCAAAGAAACTCGAGTGGTATGAGAAATTCATAGATGTTGATGAGGTCATACCAGTGAGTGCCAAGTATGGTCAAGGAGTAGATGATGTCAAGGATTGGATATTGTCAAAACTTCCTCTTGGGCCAGCTTATTATCCAAAGGACATTGTTAGTGAGCACCCGGAAAGATTCTTTGTAGGTGAGATTGTTAGAGAAAAGATCTTCATGCAATATCGTAATGAAGTTCCTTATGCATGTCAGGTCAATGTAGTGAGTTACAAAACTAGACCAACTGCTAAAGATTTTATTCAAGTTGAGATTGTTGTCGAGAAGAACTCACAGAAAATCATCCTCATTGGAAAGGAAGGGAAGGCGCTGAAACTACTTGCAACAGCAGCTCGGCTTGACATTGAAGATTTCTTGCAAAAGAAGGTGTTTCTTGAGGTGGAAGTGAAAGTAAAAGAGAACTGGCGGCAAGATGAAGGGCTTCTTAAGTACTACGGTTATGGAGGCCAAATTCAAGCGCTATAA 1308 0.4327 MALPQMEVVGLHTSISLYRETWRSHYLHRFQFTTLGKKSFLHGCSFQFRAWSRSRELVSPRTNLSIIRRVNATERVEEEFDVIDNPAAASTMSSSEDEESSASTFLSLSEKPDRNMALLDDYELEELDFASNPNHRSGYVAVLGKPNVGKSTLANQMIGQKLSIVTDKPQTTRHRILGICSGPEYQMILYDTPGVIEKKMHKLDSMMMKNVRSATINADCVVVLVDACKEPQKIDEVLEEGVGNLKDKLPTLLVLNKKDLIKPGEIAKKLEWYEKFIDVDEVIPVSAKYGQGVDDVKDWILSKLPLGPAYYPKDIVSEHPERFFVGEIVREKIFMQYRNEVPYACQVNVVSYKTRPTAKDFIQVEIVVEKNSQKIILIGKEGKALKLLATAARLDIEDFLQKKVFLEVEVKVKENWRQDEGLLKYYGYGGQIQAL* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1170 435 ProSiteProfiles Type-2 KH domain profile. 337 414 IPR004044 GO:0003723
Vvi4g1170 435 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 136 306 IPR030388 GO:0005525
Vvi4g1170 435 Hamap GTPase Era [era]. 135 428 IPR005662 GO:0003723|GO:0005525
Vvi4g1170 435 CDD Era 135 304 IPR030388 GO:0005525
Vvi4g1170 435 Gene3D - 318 432 IPR015946 -
Vvi4g1170 435 CDD KH-II_Era 327 412 - -
Vvi4g1170 435 Pfam KH domain 340 417 IPR004044 GO:0003723
Vvi4g1170 435 Gene3D - 133 317 IPR027417 -
Vvi4g1170 435 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 313 428 IPR009019 GO:0003723
Vvi4g1170 435 NCBIfam GTPase Era 138 411 IPR005662 GO:0003723|GO:0005525
Vvi4g1170 435 PANTHER GTPASE ERA 92 420 IPR005662 GO:0003723|GO:0005525
Vvi4g1170 435 MobiDBLite consensus disorder prediction 87 106 - -
Vvi4g1170 435 FunFam GTPase Era 133 316 - -
Vvi4g1170 435 FunFam GTPase Era 317 431 - -
Vvi4g1170 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 338 IPR027417 -
Vvi4g1170 435 NCBIfam small GTP-binding protein domain 140 299 IPR005225 GO:0005525
Vvi4g1170 435 Pfam 50S ribosome-binding GTPase 140 257 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1170 Vvi-Chr4 18606834 18615822 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1170 K03595 - vvi:100265087 822.002