Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1164 ATGAATTTGTTTGACAAAGCTCCTGTGGTCGCTAAGGATGCGTCTGTATCTGTTGCTCCGACTGCATCTGTCATTGGGGATGTTAAGGTGGGACAGCGGTCTTCCATTTGGTATGGATGTGTTTTGAGAGGTGATGTGAACAGCATCAGTATCGGGTCTGGAACAAATATAGAAGACAACGCTCTTGTTCATGTAGCAAGATCGAGCTTAAGTGGGAAGGTTTTACCAACTACTATTGGAGACACTGTTACTATAGGTCACGGTGCTGTCTTACATGGATGTACTGTTGAGAATGAGGCATTTATTGGTATGGGTGCTACCCTCCTTGATGGGGCTTTTGTTGAGAAACATGCAATGGTTGCTGCTGGAGTCCTTGTACTGCAGGATACTAGGATCCCCTGTGGAGAGGTATGGGCAGGTAATCCAGCAAGGTTCCTGAGGAAGCTCACTGAAGAGGAGATTGCCTTCATTTCTCAGTCAGCGATAAATTATTCTAACTTAGCACAGGTCCATGCCAAGGAAAATGCAAACAGCTTTGATGAAATCGCGTATGAGAAGGTGCTTCGGAAGAAGTTTGCATACCCTGAGACAGATTATGCGGCATTGGTGAGTGTCGACCGTGAAACACCTCCTGAGCTCATCCTCCCTGATAATATCCTACCAGAAAGGCTCCGAAAGGCCACTTAA 687 0.4614 MNLFDKAPVVAKDASVSVAPTASVIGDVKVGQRSSIWYGCVLRGDVNSISIGSGTNIEDNALVHVARSSLSGKVLPTTIGDTVTIGHGAVLHGCTVENEAFIGMGATLLDGAFVEKHAMVAAGVLVLQDTRIPCGEVWAGNPARFLRKLTEEEIAFISQSAINYSNLAQVHAKENANSFDEIAYEKVLRKKFAYPETDYAALVSVDRETPPELILPDNILPERLRKAT* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1164 228 SUPERFAMILY Trimeric LpxA-like enzymes 10 170 IPR011004 -
Vvi4g1164 228 Gene3D Hexapeptide repeat proteins 3 180 - -
Vvi4g1164 228 CDD LbH_gamma_CA_like 13 169 IPR047324 -
Vvi4g1164 228 PANTHER DYNACTIN SUBUNIT P25 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1164 Vvi-Chr4 18571249 18574224 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1164 K01726 - vvi:100266838 439.113