Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1159 ATGTCTTGCTCTTCTTCAATCACAACCGACTTGTTCAACCCCAATGCTAACAGACTTGTCATTGCGCCCTCAACTACTTTCCACCCCACTGATAGAAGTAGATGCAAATGTGTAACCAACAGAAGGGGTTTTGCCTTTAAAGGAATCGTTGCTGCGGGTGTTTCAGTCATGGCTTCTTCTGTGATTACTGACCCTGTTCAAGGGCTGGAGAGATTACCATTCAAGCCAGAGGGTTATAATTTTTGGACATGGCGAGGTCACAAAATACATTATGTAGAACAAGGAGAAGGATTTCCGATTGTTCTTATTCATGGATTTGGTGCTTCCGCATTTCATTGGAGGTATAACATTCCTGAATTGGCTAAAAGATACAAGGTTTATGCGATCGACTTGCTAGGGTTCGGGTGGAGTGATAAAGCGATTATTGAGTATGATGCCATGGTATGGAAGGATCAAGTAGAGGACTTCTTGAAAGAGATAGTGAAAGAGCAAGCAATTTTAGTCGGGAACAGTCTAGGTGGATTTACTGCTTTGGCTACAGCAGCAGAGTTGCCTGAGCAGGTTGTTGGAGTTGCTCTATTGAATTCTGCAGGACAGTTTGGAGATATAAAGGGTGAAACCATCAAGTCTGAAGAAACAGTCCTGCAAACCTACTTTCTGAAGCCTTTGAAGGAAATTTTCCAACGTATAGTTCTTGGATTTTTGTTCTGGCAAGCAAAGCAACCAGCTCGAATTGAATCTGTCTTAAAGAGTGTGTATATAAATGCCTCCAATGTGGATGACTATCTTGTGGAATCAATAACAATGCCAGCAGCTGACCCCAATGCTGGAGAAGTCTATTACAGATTAATGACCCGGTTCATGATGAATCAAAGCAAGTACACCCTTAACAGTGTCTTAAGCAAACTCTCTTGCCCGCTGTTGTTGCTCTGGGGTGACTTAGATCCATGGGTAGGTCCTGCCAAGGCAAACAGAATCAAAGAGTTCTATCCAAATACATCACTTGTAAACCTACAGGCAGGGCACTGCCCGCATGATGAAGTTCCGGAGCTTGTCAATGGTGCCTTGATTGAATGGCTGTCAAATGCTGTTAACATGTCCTAA 1104 0.4312 MSCSSSITTDLFNPNANRLVIAPSTTFHPTDRSRCKCVTNRRGFAFKGIVAAGVSVMASSVITDPVQGLERLPFKPEGYNFWTWRGHKIHYVEQGEGFPIVLIHGFGASAFHWRYNIPELAKRYKVYAIDLLGFGWSDKAIIEYDAMVWKDQVEDFLKEIVKEQAILVGNSLGGFTALATAAELPEQVVGVALLNSAGQFGDIKGETIKSEETVLQTYFLKPLKEIFQRIVLGFLFWQAKQPARIESVLKSVYINASNVDDYLVESITMPAADPNAGEVYYRLMTRFMMNQSKYTLNSVLSKLSCPLLLLWGDLDPWVGPAKANRIKEFYPNTSLVNLQAGHCPHDEVPELVNGALIEWLSNAVNMS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1159 367 Gene3D alpha/beta hydrolase 78 365 IPR029058 -
Vvi4g1159 367 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 35 362 - -
Vvi4g1159 367 FunFam Alpha/beta fold hydrolase 77 363 - -
Vvi4g1159 367 Pfam Alpha/beta hydrolase family 100 353 IPR000073 -
Vvi4g1159 367 SUPERFAMILY alpha/beta-Hydrolases 80 360 IPR029058 -
Vvi4g1159 367 PRINTS Alpha/beta hydrolase fold signature 181 194 IPR000073 -
Vvi4g1159 367 PRINTS Alpha/beta hydrolase fold signature 123 138 IPR000073 -
Vvi4g1159 367 PRINTS Alpha/beta hydrolase fold signature 167 180 IPR000073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1159 Vvi-Chr4 18547351 18550496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1159 98 363 Acyl Lipid Metabolism Gene Families AT3G10840 24.138 6.02e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1159 - - vvi:100261647 717.613