Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1154 ATGGGGAGCCGGTGCAGCTTCTTTCCTGGGTTAGCCTTTCTTATGTTTGGCTTTCTTGGCTTTATGATTCTTCCGGCCGCGGACGCTGCCATCAAGAAATACCAATTTGATGTTCAAGTGAGAAATGTGAGTAGATTGTGCCATGCAAAGCCCATAGTGACCGTAAATGGGATGTTCCCGGGGCCTACTATTTATGCTAGGGAAGGAGATAGAGTCATCATCAATGTCACCAATCATGCACAATATAACATGTCAATTCACTGGCATGGAATTAAGCAATTTCGTAATGGTTGGGCTGATGGACCCGCTTATATCACACAGTGTCCTATCCAAACTGGGAGTGCCTACACCTATGATTTCAATGTAACTGGTCAAAGGGGAACATTGTGGTGGCATGCACATATTCTTTGGCTAAGGGCAACAGTCTACGGCGCACTTGTGATCATGCCAAAACCAGGAACCCCATTTCCTTTTCCTCAGCCGTACAGTGAGGTTAACCTTCTGTTAGGAGAATGGTGGAACAACGACATCGAAGCGCTTGTGAAGCAAGGGAACAGCCGGGGCTTGCCACCCAATATGTCAGATGCCCACACAATCAATGGGAAGCCAGGGCCACTTTTTCCATGCTCTGAGAAACATACATTTGCAATGGAGGTTGAATCTGGGAAGACATACCTCTTGAGAATCATCAATGCTGCTCTCAACGATGAGCTTTTCTTTGCCATTGCCGGTCATGATATGACAGTCGTGGAGATCGATGCTGTTTACACAAAGCCATTCACCACTCAAGCTTTACTAATTGCGCCTGGCCAGACCACTAACGTTCTGGTTCAAGCCAACCAAGCGCCCAACAGATACTTCATGGCCGCTAGGCCTTTCATGGATGCCCCACTTCCAGTGGACAAACAAATGGCCACAGGCATACTCCAATACAAAGGAGTTCCGAACACTGTTCTCCCAAGCCTTCCCCAATTGCCAGCATCCAATGACACTGCATTCGCATTGAGCTACAACAAGAAGCTCAGGAGCTTAAACACCCCACAATTTCCAGTTAATGTTCCTCTGAAGGTTGATAGGAACCTCTTTTACACCATTGGGTTGGGGAGGAATCCTTGCCTCACATGCGTCAACGGAACCCGACTTACTGGTTCGTTAAACAACATCTCTTTTGTGATGCCGAATATCGGGCTTCTTCAAGCACACTACTCCAAGATTAAAGGAGTGTTCAGAACGGATTTCCCAGACCGCCCTTCTACTCCATTCAATTACACGAGTGCACCGCTAACAGCCAATCTTGGGACTTCTCAAGGCACTAGACTAAGTAAGCTTGCCTTCAACTCCACAGTTGAGTTGGTATTACAGGACACCAATCTTCTAACAGTTGAGTCGCACCCGTTTCATCTCCACGGCTATAACTTCTTTGTTGTTGGAAGCGGTATTGGAAACTTCGATCCTGCCAAAGACCCAGCTAACTATAATCTGATTGATCCTCCCGAGAGAAATACAGTTGGGGTTCCCACTGGTGGGTGGACTGCTATTCGATTTCGAGCCGATAATCCAGGTGTTTGGTTCATGCACTGTCATTTGGAGCTTCACACTGGTTGGGGATTGAAAATGGCATTTGTAGTAGAAGATGGAGAAGGGCCTGACCAATCTGTTCTGCCTCCTCCCAAGGATCTTCCACCATGCTAA 1692 0.4716 MGSRCSFFPGLAFLMFGFLGFMILPAADAAIKKYQFDVQVRNVSRLCHAKPIVTVNGMFPGPTIYAREGDRVIINVTNHAQYNMSIHWHGIKQFRNGWADGPAYITQCPIQTGSAYTYDFNVTGQRGTLWWHAHILWLRATVYGALVIMPKPGTPFPFPQPYSEVNLLLGEWWNNDIEALVKQGNSRGLPPNMSDAHTINGKPGPLFPCSEKHTFAMEVESGKTYLLRIINAALNDELFFAIAGHDMTVVEIDAVYTKPFTTQALLIAPGQTTNVLVQANQAPNRYFMAARPFMDAPLPVDKQMATGILQYKGVPNTVLPSLPQLPASNDTAFALSYNKKLRSLNTPQFPVNVPLKVDRNLFYTIGLGRNPCLTCVNGTRLTGSLNNISFVMPNIGLLQAHYSKIKGVFRTDFPDRPSTPFNYTSAPLTANLGTSQGTRLSKLAFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGSGIGNFDPAKDPANYNLIDPPERNTVGVPTGGWTAIRFRADNPGVWFMHCHLELHTGWGLKMAFVVEDGEGPDQSVLPPPKDLPPC* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1154 563 SUPERFAMILY Cupredoxins 354 563 IPR008972 -
Vvi4g1154 563 SUPERFAMILY Cupredoxins 31 175 IPR008972 -
Vvi4g1154 563 CDD CuRO_2_LCC_plant 165 311 IPR034285 -
Vvi4g1154 563 Pfam Multicopper oxidase 38 151 IPR011707 GO:0005507
Vvi4g1154 563 ProSitePatterns Multicopper oxidases signature 1. 521 541 IPR033138 -
Vvi4g1154 563 FunFam Laccase 21 150 - -
Vvi4g1154 563 Gene3D - 25 150 IPR008972 -
Vvi4g1154 563 FunFam Laccase 162 347 - -
Vvi4g1154 563 Pfam Multicopper oxidase 165 313 IPR001117 -
Vvi4g1154 563 CDD CuRO_3_LCC_plant 408 546 IPR034289 GO:0005507
Vvi4g1154 563 ProSitePatterns Multicopper oxidases signature 2. 526 537 IPR002355 GO:0005507
Vvi4g1154 563 Gene3D - 374 563 IPR008972 -
Vvi4g1154 563 Pfam Multicopper oxidase 414 546 IPR011706 GO:0005507|GO:0016491
Vvi4g1154 563 CDD CuRO_1_LCC_plant 34 150 IPR034288 GO:0005507
Vvi4g1154 563 PANTHER MULTI-COPPER OXIDASE 44 551 IPR045087 -
Vvi4g1154 563 Gene3D - 162 346 IPR008972 -
Vvi4g1154 563 SUPERFAMILY Cupredoxins 158 342 IPR008972 -
Vvi4g1154 563 NCBIfam laccase 29 563 IPR017761 GO:0046274|GO:0048046|GO:0052716
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1154 Vvi-Chr4 18526715 18528838 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1154 K05909 - vvi:100246084 1149.81