Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g1148 ATGGCGGCTTCGAGGCTGTCCTCGTGTGTAGCTATGGCGGCAGCCGTCGCTTTCTTTTCCAAGGCCTCCAGCGGCGCGTACGCAGACGGTCCGTTTCGATTCTCGCCTTTCTCTTCATCACCTCCCCAGACCTCTCAATCCTCTGTTGAAAAATCGGAGGACAAGTCGGAGGCCGATGAGCCGAGAGTCAGTTCCTCGGGGTTCGACCCCGAATCCCTGGAAAGAGGCGCCAAAGCTCTTCGCGAAATCAACAGCTCTCCCAACGCTAAACAGGTTTTTGAAATTATGAGAAAGCAAGAACAAACTCGACTGGCCGAGTTGGCAGCTGAGAAGGCTCATCAAGAAGCAATTCAAGCTCAAGCTGATATCGATAAGCAGCGGAAAATGGCTGAAGAACAAATGAATCTAGTACAGCAACAAGCACAGGCAAAGGCACAAATGCTACGATATGAAGATGAGTTGGCTAGGAAAAGAATGCAGACAGATCATGAAGCTCAGAGGCGACATAATGTTGAATTGGTTAAAATGCAAGAGGAATCCTCCATACGAAAAGAACAAGCAAGACGGGCGACTGAGGAGCAGATCCAAGCTCAACAACGCCAGACTGAGAAAGAGAGAGCTGAGATAGAGCGGGAAACCATACGAGTAAAGGCCATGGCTGAGGCTGAAGGCCGGGCCCATGAAGCAAAATTAACAGAAGACCATAACAGGAGAATGCTTATAGAGCGGATGAATGGTGAAAGAGAGAAGTGGCTTGCTGCGATTAATACAATGTTTAGTCATATTGAAGGGGGTTTCAGAGTTCTATTGACCGATAGGAATAAGTTGCTTATGGCTATAGGAGGAGCCACTGCAGTGGCCGCTGGTGTTTATACAACAAGAGAGGGTGCTAGGGTTACTTGGGGTTATATCAACCGGATACTGGGGCAGCCATCACTAATTCGGGAGTCATCCATAGCTAAATTTCCATGGTCAGGGATGGTTTCTCGAGGAACGAATAAGGTGTTGAATTACAGTACAGCAGCTGGGGGAGCAAGGCCTGGGGAAAATAAGACCAGTTTTGGAAATATTATTCTCCACCCTTCATTGCAGAGGAGAATAGAGCATCTTGCTCGAGCTACATCAAATACTAAGTCTCACCAGGCACCCTTTCGAAACATGCTGTTTTATGGGCCTCCTGGCACGGGTAAAACTATGGTCGCAAGGGAGATAGCTCGAAAATCGGGTTTGGATTATGCCATGATGACTGGAGGGGATGTTGCACCTCTTGGCGCACAGGCTGTCACCAAGATCCATCAAATATTTGATTGGGCAAAAAAATCAAACAAAGGTTTACTGCTTTTCATTGATGAGGCTGATGCTTTTCTATGCGAGCGGAACAGCACACGCATGAGTGAAGCTCAACGAAGTGCTCTAAATGCATTGCTTTTTCGGACGGGAGACCAGTCAAGAGAAATCGTTCTTGTCCTTGCCACAAACAGACCAGGCGATCTTGATAGTGCTGTGACTGACCGCATTGATGAAGTGATCGAGTTCCCGCTTCCAGGGGAGGAGGAGCGTTTCAAACTGCTGAAGCTCTATTTGGACAAGTATCTCTCTGATGAAGGCCAAAGCACATCTAAGTGGAACCCTCTATCAAAGAGTAAGCCACAGAAGGTAACCATAAAAGATGTGTCTGAAGATGTGATCCGAGAGGCAGCCAGGAAGACAGAAGGCTTCTCTGGCCGTGAGATAGCAAAACTCATGGCTGGTATCCAAGCAGCTGTGTACGGTCGGCCAGACTGTGTATTGGATTCCCAGCTGTTCATGGAGATAGTAGATTACAAGGTTGCAGAGCATCACCAGCGACTTAAACTGGTAGCAGAAGGTGGTCACCCAGCTTAA 1884 0.4804 MAASRLSSCVAMAAAVAFFSKASSGAYADGPFRFSPFSSSPPQTSQSSVEKSEDKSEADEPRVSSSGFDPESLERGAKALREINSSPNAKQVFEIMRKQEQTRLAELAAEKAHQEAIQAQADIDKQRKMAEEQMNLVQQQAQAKAQMLRYEDELARKRMQTDHEAQRRHNVELVKMQEESSIRKEQARRATEEQIQAQQRQTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERMNGEREKWLAAINTMFSHIEGGFRVLLTDRNKLLMAIGGATAVAAGVYTTREGARVTWGYINRILGQPSLIRESSIAKFPWSGMVSRGTNKVLNYSTAAGGARPGENKTSFGNIILHPSLQRRIEHLARATSNTKSHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHQIFDWAKKSNKGLLLFIDEADAFLCERNSTRMSEAQRSALNALLFRTGDQSREIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERFKLLKLYLDKYLSDEGQSTSKWNPLSKSKPQKVTIKDVSEDVIREAARKTEGFSGREIAKLMAGIQAAVYGRPDCVLDSQLFMEIVDYKVAEHHQRLKLVAEGGHPA* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g1148 627 Coils Coil 109 129 - -
Vvi4g1148 627 Pfam ATPase family AAA domain-containing protein 3, N-terminal 48 315 IPR021911 -
Vvi4g1148 627 Coils Coil 140 160 - -
Vvi4g1148 627 PANTHER PUTATIVE ATP-ASE 24 623 - -
Vvi4g1148 627 MobiDBLite consensus disorder prediction 50 64 - -
Vvi4g1148 627 FunFam ATPase family AAA domain-containing protein 3 341 531 - -
Vvi4g1148 627 ProSitePatterns AAA-protein family signature. 486 505 IPR003960 GO:0005524|GO:0016887
Vvi4g1148 627 Pfam ATPase family associated with various cellular activities (AAA) 387 514 IPR003959 GO:0005524|GO:0016887
Vvi4g1148 627 MobiDBLite consensus disorder prediction 30 73 - -
Vvi4g1148 627 Coils Coil 188 215 - -
Vvi4g1148 627 Gene3D - 340 531 IPR027417 -
Vvi4g1148 627 SMART AAA_5 383 516 IPR003593 GO:0016887
Vvi4g1148 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 609 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g1148 Vvi-Chr4 18459754 18488005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g1148 363 591 Miscellaneous Gene Families AT5G53170 30.417 3.07e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g1148 K17681 - vvi:100263248 1176